mvdbeek
03fb43a00d
Merge branch 'release_24.2' into release_25.0
2025-06-16 19:34:41 +02:00
mvdbeek
6d0a0b53aa
Link workflow invocation outputs upon importing invocation
2025-06-16 15:02:47 +02:00
Nicola Soranzo
aa49793ecf
Make CompressedFile a context manager
...
to ensure that the archive is closed.
2025-01-18 14:40:30 +00:00
mvdbeek
2d7667d958
Add regression test for #18927
2024-11-27 18:34:41 +01:00
Nicola Soranzo
e975ca3754
Update to black 2024 stable style
2024-01-30 18:09:51 +00:00
Tillman
1b9d632a08
Remove comments
2023-12-23 15:43:07 +01:00
Tillman
9b2435ec7b
Add test for report_pdf operations of InvocationAPI
2023-12-23 15:43:07 +01:00
davelopez
c776c8169a
Validate BioCompute Objects against schema in tests
2022-10-14 12:20:24 +02:00
davelopez
0950722c7c
Exclude null values when serializing BCO
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+ fix typo
2022-10-14 12:20:24 +02:00
davelopez
2140df7eed
Add basic BCO export integration tests
2022-10-14 12:20:24 +02:00
Nicola Soranzo
c35d8f2a06
Replace `unittest.TestCase` with pytest-based partial re-implementation
...
Also:
- Rename `FooBarTestCase` test classes as `TestFooBar`. These were collected
by pytest only because they were `unittest.TestCase` derived, but normally
pytest collects only test classes whose name starts with `Test`, see
https://docs.pytest.org/en/7.1.x/reference/reference.html#confval-python_classes
2022-09-27 03:34:58 +01:00
davelopez
0128e05a23
Fix export ro-crate to file source
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Write to the store the correct archive file
2022-09-16 17:19:49 +02:00
John Chilton
3dbe2891e7
Implement RO Crate export of Galaxy histories and invocations.
2022-09-13 19:20:48 -04:00
mvdbeek
9c2accc6df
Explictly call required handle_galaxy_config_kwds methods
2022-05-27 17:33:55 +02:00
mvdbeek
0bf7ed933e
Drop global setup_celery_includes
...
Should be handled by autouse fixture
2022-05-27 17:33:55 +02:00
John Chilton
c5bf63bc91
Add DEFERRED datasets to Galaxy
...
- Improves options and display around discarded datasets.
- Adds new APIs for importing model stores.
- Adds support to model store layer for importing/exporting workflow invocations and APIs and tests to support this.
- Add new DEFERRED dataset state - with APIs for materializing them or the option to defer them on the worker node if using tool_evaluation_strategy=remote on the job destination.
- UI and API options for uploading deferred datasets individually or into collections.
2022-05-23 19:48:47 -04:00
mvdbeek