6 Commits

Include renames

Author	SHA1	Message	Date
Daniel Blankenberg	b2e2b801ea	Enhance data_source.py to take advantage of the content length when known. If content length provided by external application is ... greater than config.output_size_limit, no data will be retrieved and an error message will be provided to the user. Tools using this script have been updated to provide the max file size on the command line. Resolves ticket #93.	2009-08-03 12:02:54 -04:00
Greg Von Kuster	051a78bc39	Add new tool config for flymine production server.	2009-01-13 10:55:08 -05:00
Greg Von Kuster	b74f176613	Add a new URL_method attribute to data_source tool types whose value is either "get" or "post" ( some require a get request while others require a post request ). This fixes the Biomart problem ( along with a new, well documented hack that can be eliminated when Biomart encodes the value of URL in the initial response - they'll tell us when they've fixed this ). Also added some requested info to the "send to EpiGRAPH" tool.	2008-10-27 16:03:43 -04:00
Greg Von Kuster	288912ee87	Fixes for data_source tools, data.name, data.info, data.dbkey, and data.extension should now be properly set. Eliminated fastq data type from datatypes_conf.xml.sample since it is not a supported data type.	2008-10-17 10:46:29 -04:00
Greg Von Kuster	b3b6c54247	Use only 1 underlying executable ( data_source.py ) for data source tools. A new tag set is added to the data source tool configs to handle tranlsation of request param names sent by remote apps ( something like <param_trans galaxy_name="dbkey" remote_name="GENOME" missing="?" /> ).	2008-10-07 15:21:46 -04:00
Greg Von Kuster	b4890c1bbb	Integrate with intermine ( data source ) and epigraph ( data destination ). Receiving data from epigraph coming soon. Data is sent to epigraph using a combination of DATA_URL and REDIRECT_URL tool params. This tool creates jobs, but does not queue them for execution.	2008-09-22 10:36:34 -04:00