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61,895 Commits 69 Branches 243 Tags
86e42b54833dbba0c014b888a61ba8d36d5acb7b
Commit Graph
827 Commits
Author SHA1 Message Date
Nate Coraor 86e42b5483 Update Gravity to 0.13.4 and document setting env vars on dynamic 
handlers.
 2022-09-01 10:40:54 -04:00
Nicola Soranzo 4fcbe80268 Doc fixes 2022-08-19 18:33:20 +01:00
Marius van den Beek cd94ccb6c5 Merge pull request #14457 from natefoo/log-rotation 
[22.05] Add log rotation options and update logging documentation
 2022-08-17 19:24:07 +02:00
Nicola Soranzo 961472cfff Merge branch 'release_22.01' into release_22.05 2022-08-16 23:25:42 +01:00
Nate Coraor 3522fd3a49 Add log rotation options and update logging documentation 2022-08-15 20:54:02 -04:00
Nicola Soranzo 69defb7a20 Doc fixes 2022-08-15 19:15:02 +01:00
mvdbeek 728ceebc8a Fix nested archive unzipping on windows 
We need the directory markers in order for the default windows zip
utility to be able to extract the archives. Also requires
https://github.com/evanmiller/mod_zip/commit/51cf45d3e9f51e02224af017b235d1d30fbf28fb
or newer on the mod_zip side.
 2022-08-10 17:33:29 +02:00
Cameron Hyde ffb9b34d89 Update config schema descriptions for tool search 2022-07-28 17:32:32 -05:00
Cameron Hyde 2ca6e7353b Add new config params for tool search 2022-07-28 17:29:58 -05:00
Nate Coraor 270790edc7 Correct standalone pool names 2022-06-15 11:47:51 -04:00
Dannon Baker adb02555cb Fix proxy_port arg for interactivetools config sample/doc 2022-06-07 10:40:09 -04:00
Dannon 4644922783 Merge pull request #13655 from mvdbeek/metadata_embed 
Create data_fetch and set_metadata celery tasks
 2022-06-07 10:27:06 -04:00
Nicola Soranzo ed9b009ea7 Merge pull request #14013 from qiagu/doc 
Fix a small error in job doc
 2022-06-04 03:05:48 +02:00
Qiang GuandNicola Soranzo bb72b21ae4 Update doc/source/admin/jobs.md 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2022-06-03 17:29:12 -07:00
Qiang GuandNicola Soranzo e701a7055d Update doc/source/admin/jobs.md 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2022-06-03 17:28:57 -07:00
qiagu fa5eee19d7 Fix job doc 2022-06-03 13:08:44 -07:00
mvdbeek 33a3a203f4 Decrease monitor sleep in tests 2022-05-26 12:48:43 +02:00
mvdbeek d845f2a880 Update config file description 2022-05-25 19:46:05 +02:00
M Bernt d3da6b94f7 Merge branch 'dev' into topic/auth-maxretries 2022-05-21 17:32:31 +02:00
Dannon 71ec553098 Merge pull request #13829 from ahmedhamidawan/Custos_login_enh 
Custos Login Ambiguity enhancement
 2022-05-09 06:23:38 -07:00
Nicola Soranzo 5dcafe752b Update Celery and Kombu links 2022-05-06 13:29:14 +01:00
Dannon Baker 754da9d701 Example custos-specific login onfig value serialized through to client 2022-04-29 15:59:42 -04:00
Dannon Baker 0e3f437cae Fix up configuration for STS. Can't rebuild config without this. 2022-04-29 15:31:30 -04:00
Nicola Soranzo 6da2f0e98c Merge branch 'release_22.01' into dev 2022-04-22 18:23:33 +01:00
mvdbeek da61e77068 Fix persistent mulled cache unused for repo_has_name 2022-04-14 12:10:42 +02:00
Dannon Baker ec8bd0e9b2 Rename option to 'use_legacy_history'; invert assertions. 2022-04-13 13:28:41 -04:00
Dannon Baker 10e5fcc7a7 Swap new history to default, leave fallback option. 
Add beta history toggle to config

Add flag for defaulting beta history

Instance default history config

Minor refactoring, use a const for key

Swap site default to *not* use the beta history (yet)

Prettier...
 2022-04-12 22:04:54 -04:00
mvdbeek 6f3bdd39d9 Merge branch 'release_22.01' into dev 2022-04-08 10:13:24 +02:00
mvdbeek e08d0c2c99 Fix gunicorn_extra_args, this is just extra_args nows 2022-04-06 20:37:17 +02:00
mvdbeek 9abb53a2c8 Fix apache config for uploads 2022-04-06 20:37:15 +02:00
mvdbeek 3818f50af5 Drop interactive environments 2022-03-23 15:43:24 +01:00
Nicola Soranzo e66bb0912d Drop last references to uWSGI 2022-03-22 14:31:08 +00:00
Dannon 48579cf698 Merge pull request #13288 from dannon/menu-cleanup 
[WIP] Menu cleanup
 2022-03-22 08:15:15 -04:00
Assunta DeSanto b2278f842f reverting how to cite link to link on HUB 2022-03-21 09:15:41 -04:00
Assunta DeSanto ff8a036fc4 Merge branch 'dev' of https://github.com/galaxyproject/galaxy into menu-cleanup 2022-03-21 09:12:41 -04:00
mvdbeek a9420d24b5 Drop remaining references to uWSGI 2022-03-21 13:44:37 +01:00
John Chilton 72f3a6f465 Merge branch 'release_22.01' into dev 2022-03-15 14:51:10 -04:00
mvdbeek 5db8c57731 Also update python.md for minium python version (3.7) 2022-03-15 15:23:39 +01:00
Marius van den Beek 95b85539eb Merge pull request #13447 from ic4f/dev_converters4 
Add built-in converters to tool panel
 2022-03-08 18:21:10 +01:00
Marius van den Beek c9402d93e4 Merge pull request #13481 from ic4f/dev_docs_uwsgi5 
Update logging configuration documentation
 2022-03-07 16:35:10 +01:00
Sergey Golitsynskiy f19afc95c5 Drop last ini mention 2022-03-07 09:58:16 -05:00
Sergey Golitsynskiy 4102cce645 Drop INI section 2022-03-07 09:58:07 -05:00
Nicola Soranzo a62e86fc2e Merge branch 'release_22.01' into dev 2022-03-04 17:02:22 +00:00
Marius van den BeekandNicola Soranzo 18e036f7df Tweak the migrating to gunicorn document 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2022-03-04 15:24:08 +01:00
mvdbeek 0351fae814 Mention that uWSGI support will be removed in 22.05 2022-03-04 13:24:09 +01:00
Marius van den BeekandSergey Golitsynskiy b43d7ed641 Improve gunicorn migration docs 
Thanks Sergey!

Co-authored-by: Sergey Golitsynskiy <sgolitsynskiy@gmail.com>
 2022-03-03 21:19:14 +01:00
Sergey Golitsynskiy 61d28eeea4 First pass at editing logging config docs 2022-03-03 13:54:07 -05:00
mvdbeek 80f1f00e4e Add Migrating from uWSGI to Gunicorn and FastAPI document 2022-03-03 19:39:36 +01:00
John Chilton acea74022e Merge pull request #13470 from mvdbeek/it_doc_update 
Update interactive tool docs for Gunicorn / dropping uWSGI
 2022-03-03 10:30:55 -05:00
mvdbeek ed8ce47c42 Claify galaxy_infrastructure_url / IT container relationship 2022-03-03 10:56:27 +01:00