Jeremy Goecks
755256aff2
Trackster: for variant track painter, only draw loci in viewing region.
2013-05-22 15:23:15 -04:00
Jeremy Goecks
7d7f04a5b4
Viz framework fixes: (a) add hda_ldda attribute to API dicts of HDAs and LDDAs; (b) remove summary tree from Circster; (c) make Circster compatible with recent change to get HDAs from API. Pack scripts.
2013-05-21 14:37:51 -04:00
Carl Eberhard
a13d13d077
Scatterplot: use named data provider, fix encoding of ids; pack scripts
2013-05-21 12:54:21 -04:00
Carl Eberhard
730a15657f
Fixes to phyloviz
2013-05-21 11:15:10 -04:00
Jeremy Goecks
2140a14bf0
Trackster: transparency and state fixes for variant painter.
2013-05-20 16:16:03 -04:00
Jeremy Goecks
834cbd6582
Pack script.
2013-05-20 13:48:08 -04:00
Carl Eberhard
df1927422c
Visualizations framework: allow users to associate custom visualizations with models, datatypes, etc. via an xml configuration file (visualizations_conf.xml)
2013-05-17 14:45:07 -04:00
Daniel Blankenberg
12b858f9cd
Make form input auto-focus declarative.
2013-05-08 10:58:52 -04:00
Daniel Blankenberg
fb0cd7b304
Pack scripts
2013-05-08 10:45:12 -04:00
Daniel Blankenberg
6c6e08a7ef
Fixes for trackster visualizing single sample vcf and for getting colors of non-standard bases.
2013-04-18 15:39:32 -04:00
Daniel Blankenberg
4f620dd979
Auto Focus on first item on forms.
2013-04-18 13:14:14 -04:00
Carl Eberhard
57f8714725
History panel: ensure syncing of history state and hda states by passing hda dicts to get_history_dict; pack scripts
2013-04-17 16:36:01 -04:00
Carl Eberhard
12bdb2aec3
History panel: allow query val for hda_id to scroll specific hda into view, cleanup; browser tests: add download, info, and rerun button tests
2013-04-16 14:03:11 -04:00
Jeremy Goecks
f442f2116d
Merge in stable branch.
2013-04-12 16:16:17 -04:00
Jeremy Goecks
de1a836a73
Fixes for running tools in Trackster.
2013-04-12 16:12:01 -04:00
Carl Eberhard
505684068b
history panel: move history options menu code into index.mako, localization pass; pack scripts
2013-04-11 16:48:47 -04:00
Carl Eberhard
062387374c
base_panels: move quota meter js into base_panels, provide bootstrapped user JSON, create Galaxy js namespace; history panel: don't use backbone-relational in dataset, user, or history; misc jsHint cleanup; expose_api: defend against no key provided; pack scripts
2013-04-11 13:00:38 -04:00
Carl Eberhard
b1c3cb55ff
Edit attributes: HDA name, info, annotation: display 'None' values in inputs as empty strings; History panel: remove last modal/alert
2013-04-10 12:22:11 -04:00
Carl Eberhard
73a4e9ded6
History panel: hack to show expanded HDA bodies in chrome; pack scripts
2013-04-10 11:30:37 -04:00
Carl Eberhard
f799e0fded
history panel: handle errors better on the client side, remove alerts, continue update attempts if error is 'Bad Gateway'
2013-04-09 19:17:51 -04:00
Carl Eberhard
551cf6b971
history panel: better error-handling
2013-04-09 16:39:43 -04:00
Carl Eberhard
4477aeab85
history panel: do not fetch display apps if there are no hdas yet
2013-04-05 14:01:59 -04:00
Carl Eberhard
b02f3851e9
history panel: fix test for partial/full render of hdas to prevent 'blinking'2
2013-04-05 13:50:24 -04:00
Carl Eberhard
a4ec54d727
re-run handlebars on available templates; pack scripts
2013-04-03 17:20:01 -04:00
Carl Eberhard
c8cfcc2fb3
That went well. (rollback changes to backbone, backbone-relational, and handlebars.runtime to not break every possible thing)
2013-04-02 14:41:29 -04:00
Carl Eberhard
ce6c114c6a
update js libs: underscore 1.3.1 -> 1.4.4, backbone 0.9.2 -> 1.0, backbone-relational 0.5.0 -> 0.8.0, handlebars 1.0.beta.6 -> 1.0.rc1
2013-04-02 14:27:23 -04:00
Carl Eberhard
96f5b1854e
pack_scripts.py: have yuicompressor use utf-8 as the charset; remove unused packed scripts; update d3.js from 2.9.2 to 3.1.4
2013-04-02 14:20:55 -04:00
Carl Eberhard
422281a252
pack scripts
2013-04-01 11:20:18 -04:00
Jeremy Goecks
e45a787716
Trackster fixes: (a) render bases/colors in Firefox; (b) make deletions black to avoid color conflicts with colored bases; (c) use group name for composite track. Modal fix: set maximum body height so that it does not overflow the bottom of the page. Pack scripts.
2013-03-20 10:55:24 -04:00
Aysam Guerler
3dd22cf745
Fixed: No confirm on delete permanently (footer button), saved histories
2013-03-15 14:32:30 -04:00
Carl Eberhard
2aefbcdcd3
history panel: remove display, edit, and delete buttons from hdas in the new state; pack scripts
2013-03-12 16:14:37 -04:00
Carl Eberhard
ac34fddc56
history panel and api: if hda.peek is 'no peek' do not send peek through api and do not render peek in expanded hda
2013-03-06 10:02:24 -05:00
Jeremy Goecks
e84d447d07
Trackster: (a) handle corner case when feature starts at tile boundary and (b) remove poor tile index usage. Pack script.
2013-03-01 16:18:23 -05:00
Jeremy Goecks
5be04ef7b9
Trackster: standardize start and end of regions to fall between bases.
2013-02-28 22:54:11 -05:00
Jeremy Goecks
15ca057151
Pack scripts.
2013-02-28 16:55:33 -05:00
Jeremy Goecks
6ebb660cba
Trackster: prevent data requests for very small regions by using a (configurable) minimum region size. This improves performance when zoomed in on small regions. Pack scripts.
2013-02-19 10:16:21 -05:00
Jeremy Goecks
283cb406f9
Move grid element initialization to main body to prevent it from happening too early. Pack scripts.
2013-02-17 14:59:02 -05:00
Jeremy Goecks
e3843d0279
Use 0-based coordinates for BBI data and display.
2013-02-14 18:56:27 -05:00
Jeremy Goecks
53352f18b0
Grid framework fixes, including extension of sanitize_text to work with lists of text.
2013-02-14 13:48:52 -05:00
Carl Eberhard
12dbbbf805
Fix to trackster/util.js exports; Fix to docstring in history_contents; Fix alert text in hda-model
2013-02-12 14:26:30 -05:00
Jeremy Goecks
a52ae86a3f
Pack scripts.
2013-02-12 12:01:37 -05:00
Jeremy Goecks
e4ff2da11b
Refactor tabular chunked display into Backbone and use for displaying tabular data.
2013-02-04 12:37:32 -05:00
Carl Eberhard
9d6d64684b
history panel: ensure deleted or purged datasets are considered ready to the updater; pack scripts
2013-02-04 12:14:23 -05:00
James Taylor
260228e8b1
Add some missing files
2013-02-03 23:22:16 -05:00
James Taylor
56a81d0134
Support for using Sentry for error logging. If sentry_dsn is set in
...
universe_wsgi.ini, then:
- A middleware will be installed that send thrown exceptions to sentry
- All logging messages of level WARN and above will be sent to sentry
- All pages extending base/base_panels will have javascript errors
captured and sent to sentry
2013-02-02 17:56:55 -05:00
Jeremy Goecks
517fb61e20
Fixes for 149f0fc and pack scripts.
2013-01-30 10:54:15 -05:00
Carl Eberhard
ba73ae7c33
history panel: log responseText of history-model update errors; pack scripts
2013-01-28 16:22:47 -05:00
Jeremy Goecks
409ba63a4f
Grid framework refactoring to increase speed and ease of debugging: (1) create and use Backbone object for grid; (2) move grid javascript to its own file; (3) remove webapp parameter; (4) augment search box style so that search button does not wrap. Pack scripts.
2013-01-28 14:02:25 -05:00
Daniel Blankenberg
979c1a6a16
Pack scripts.
2013-01-07 11:45:30 -05:00
Carl Eberhard
fc4ca70d27
history panel: panel was not showing deleted datasets when a dataset was purged (even when set to 'include deleted datasets') - fix by using purge_async; history panel: fix history-options menu checkbox with new font awesome class format; pack scripts
2013-01-04 10:57:18 -05:00
Jeremy Goecks