Commit Graph
11 Commits
Author SHA1 Message Date
Nicola Soranzo f865e8359f Deprecate size attribute of <param/> and remove it from tools
Also:
- dos2unix test/functional/tools/for_workflows/head.xml
- Single-quote text and data params in `<command/>`
- Remove deprecated `interpreter` attribute of `<command />`
2018-09-10 11:34:37 +01:00
mvdbeek 6c7203b83d py3: Fix qual_stats_boxplot 2018-09-05 14:22:00 +02:00
Nicola Soranzo 341a6cf760 Use requirements of type="package" instead of deprecated "binary". 2015-05-15 12:43:15 +01:00
John Chilton 8db7eed06a Add annotated citations various tools. 2014-08-06 09:41:38 -04:00
Jeremy Goecks 9a5679c37c Use mako template in tool help so that dynamic image paths can be used. Fixes #141 2012-08-07 09:40:51 -04:00
Daniel Blankenberg a6ecae74fd Minor tool help updates. 2011-09-08 10:34:56 -04:00
Kanwei Li 2d0b8eb830 Adjust image links in tools to work with a proxy prefix [Brad Chapman]. Fixes #141 2010-12-14 14:22:13 -05:00
Anton Nekrutenko 2763d08d86 Modified help section and help tags to ease paremeter selection by the user 2010-12-03 09:57:45 -05:00
Daniel Blankenberg 00306e15ed Make boxplot tool respect exit codes when determining job errors: makes e.g. 'Could not find/open font when opening font "arial", using internal non-scalable font' a non-fatal warning. Add version attribute to gnuplot requirement tag. 2010-03-22 11:06:40 -04:00
Daniel Blankenberg 4cb98d8b5f Add gnuplot requirement tag to boxplot tool. 2010-02-23 19:54:54 -05:00
Daniel Blankenberg 8082c6f36f Add a new FASTQ tool suite. Four FASTQ variants are supported: sanger, illumina, solexa and solid.
Tools include:
	FASTQ Groomer convert between various FASTQ quality formats
	Combine FASTA and QUAL into FASTQ
	FASTQ joiner on paired end reads
	FASTQ splitter on joined paired end reads
	FASTQ to FASTA converter
	FASTQ Summary Statistics by column
	Filter FASTQ reads by quality score and length
	FASTQ Trimmer by column
	Manipulate FASTQ reads on various attributes
	Boxplot of quality statistics (Generic, with outliers)
2010-02-23 16:48:07 -05:00