 Kelly Vincent
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d149382f05
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Added version info to stdout for NGS tools
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2010-11-24 12:35:49 -05:00 |
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Kelly Vincent
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eeca0c723a
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Updated NGS tools' stderr handling to use file rather than pipe to allow for large stderr output
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2010-04-12 15:56:13 -04:00 |
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Kanwei Li
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0952b28502
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Sync hashbangs
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2010-04-01 20:36:31 -04:00 |
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Kelly Vincent
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38ad670389
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Updated several NGS tools to better handle stderr (allow for extremely large stderr output)
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2010-03-30 16:33:19 -04:00 |
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Kelly Vincent
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44fb42f6a0
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Fix try-except-finally bug to be compatible with Python 2.4 in several tools and twilltestcase.py. Updated liftOver test to replace hard-coded (incorrect) path and modified code file to allow for new path. Improved bowtie error handling.
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2010-03-10 11:51:00 -05:00 |
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Kelly Vincent
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a314b3716b
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Updated BWA wrapper, SAM to BAM, SAM Merge, and SAM Pileup so that the return code of the program is captured and if it fails, the stderr is printed; temp files are created locally; a message is printed if results file empty.
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2010-02-23 10:40:19 -05:00 |
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Kelly Vincent
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0ffbe38fc3
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Several small changes to Samtools pileup tool to get it to work with user-supplied reference genome
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2009-10-05 10:35:39 -04:00 |
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Kelly Vincent
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1008d8692f
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Added several options to the Samtools pileup tool
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2009-09-01 17:01:44 -04:00 |
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Kelly Vincent
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9d0dd5f7ce
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Added samtools-based tools (sam_to_bam, sam_merge, sam_pileup) with their supporting files and modified Bam datatype so temp files are properly cleaned up
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2009-08-28 15:59:16 -04:00 |
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