 Jeremy Goecks
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76fcd6c852
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Trackster and sweepster fixes for vis framework refactoring.
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2012-09-16 10:57:30 -04:00 |
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Jeremy Goecks
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ba70f84b8e
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Bug fixes for changeset 6243b992762c that enable tools to be run in Trackster. Also add URL to all datasets and pack scripts.
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2012-09-15 17:06:36 -04:00 |
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Jeremy Goecks
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dd668184dc
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Viz framework refactoring: remove tracks controller, moving code that handles data requests to the API and code that manages track browsers to visualization controller.
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2012-09-15 16:08:41 -04:00 |
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Jeremy Goecks
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5902d7da23
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Viz framework refactoring: move visualization view methods into base class and move chromosome/reference data methods to API.
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2012-09-14 17:57:07 -04:00 |
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Jeremy Goecks
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f4a430961c
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Fixes for controller mixin hierarchy. Move track config response from tracks controller to API datasets controller.
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2012-09-14 17:03:11 -04:00 |
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Carl Eberhard
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82e776a27f
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history.js: refactored body renderers
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2012-09-13 19:53:12 -04:00 |
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Jeremy Goecks
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26439c39b0
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Move require.js to libs directory.
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2012-09-13 16:23:08 -04:00 |
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Carl Eberhard
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3ceb124bfb
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fixes to iconButton template; have IconButtonView use that template
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2012-09-13 14:08:09 -04:00 |
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Carl Eberhard
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f6282874ec
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Added history.js templates: icon-button partial, hdaSummary, titleLink; packed scripts
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2012-09-13 11:58:14 -04:00 |
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Jeremy Goecks
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044223adc4
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Bug fix and code cleanup for recent visualization commits.
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2012-09-13 09:30:42 -04:00 |
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James Taylor
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1161fccb19
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adding packed scripts
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2012-09-12 15:43:03 -04:00 |
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James Taylor
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fdbe49d665
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js: introducing a requirejs starting with circster. circster.js is a pure AMD module. visualization.js is AMD/browser compatible
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2012-09-12 15:38:52 -04:00 |
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James Taylor
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3f7d9c3f39
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circster: pull out circster code an encapsulate
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2012-09-11 15:43:09 -07:00 |
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James Taylor
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6aeff2dc05
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circster: moving some rendering code around to enable faster bigwig rendering, adding a Base class using Backbone style inheritence
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2012-09-11 15:24:26 -07:00 |
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Dannon Baker
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86fd5335dc
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Pack scripts.
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2012-09-12 13:05:15 -04:00 |
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Dannon Baker
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6343568640
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Enhance replace_big_select_inputs to accept a list of elements instead of automatically grabbing all selects.
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2012-09-12 12:59:19 -04:00 |
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Carl Eberhard
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5876db98f9
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clean debug statements from history.js
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2012-09-12 11:09:09 -04:00 |
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Carl Eberhard
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c386f70c8a
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Client side templates for history panel; IconButtonView in ui.js; copied BaseModel/View into base-mvc.js; stubs for annotations, tags MVC; cleaned up controllers/root.py
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2012-09-12 11:03:17 -04:00 |
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James Taylor
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4ec0018c61
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circster: render in entire window, ensure initially entire plot fits in view and is centered
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2012-09-10 17:40:56 -04:00 |
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Jeremy Goecks
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e8e25ec41a
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Circster enhancements: (a) dragging and zooming; and (b) fill complete palette.
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2012-09-08 12:08:33 -05:00 |
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Jeremy Goecks
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13cdd234b8
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Pack scripts.
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2012-09-05 22:28:32 -04:00 |
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Jeremy Goecks
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0d2a7cf7ea
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Add feature search to Trackster; typing in location box will search tracks in visualization for features that start with entered text. Works with both GFF/GTF and BED datasets. Fixes #611
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2012-09-05 17:26:43 -04:00 |
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Jeremy Goecks
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686bbb1bb3
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Remove jQuery UI slider code because it's now integrated into jquery-ui custom package.
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2012-09-05 09:50:23 -04:00 |
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Jeremy Goecks
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e7b7853dd2
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jQuery UI enhancements: (a) update to v1.8.23; (b) remove core script and replace with script that includes core, autocomplete, sliders, and dependencies; (c) replace overcast theme with smoothness theme; and (d) add directory for jQuery UI styles.
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2012-09-05 09:35:21 -04:00 |
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Carl Eberhard
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f1c09ee6cf
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merge; add temporary template to commit
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2012-08-31 12:12:28 -04:00 |
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Carl Eberhard
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ac67dc378e
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(WIP) history panel, backbone.js conversion (includes alternate_history.mako as a temporary transition template)
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2012-08-31 11:53:46 -04:00 |
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Tomithy Too
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516d727229
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re-integrated phyloviz to a new fork of galaxy-central with a tat of minor touch up; save and edit now works
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2012-08-26 18:22:23 +08:00 |
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Jeremy Goecks
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2b561bccfb
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Trackster: for feature tracks, only draw name if available.
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2012-08-23 13:56:34 -04:00 |
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Jeremy Goecks
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2a4012e03d
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Final JS reorg to rename and move files so that all files follow standard conventions.
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2012-08-21 17:08:35 -04:00 |
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Jeremy Goecks
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66d1892364
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More JS file reorganization: (a) move IE and rgenetics into their own directories; (b) move additional external libraries to libs.
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2012-08-21 16:54:19 -04:00 |
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Jeremy Goecks
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44d37d7eee
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Move most jQuery files into own libs directory.
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2012-08-21 15:52:50 -04:00 |
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Jeremy Goecks
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a3d8452df5
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JavaScript cleanup: (a) create backbone lib in scripts/lib and use for backbone libraries; (b) clean up history.js; (c) pack scripts.
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2012-08-21 14:27:18 -04:00 |
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Jeremy Goecks
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871f72c956
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Trackster: for explicit coverage histogram mode in Feature Tracks, use coverage indices rather than computing on client side.
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2012-08-19 15:42:11 -04:00 |
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Carl Eberhard
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b2a5996a6c
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tool-data change to fix bwa_wrapper.test_tool_000001; backbone history.js start
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2012-08-14 13:15:48 -04:00 |
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Jeremy Goecks
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bcc9a3b73d
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Update track icons when decomposing a composite track into individual tracks.
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2012-08-07 09:52:14 -04:00 |
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Jeremy Goecks
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29037352df
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Trackster and data providers: fix and document one-off/coordinate systems used for different track types.
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2012-08-03 11:20:43 -04:00 |
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Carl Eberhard
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6337e6565b
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fixes for tool search clear-btn (to use templating); added bootstrap.js to tool menu iframe
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2012-08-02 16:43:59 -04:00 |
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Carl Eberhard
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62b0725513
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btn/esc to clear tool search (bb issue #774)
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2012-08-02 12:21:49 -04:00 |
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Jeremy Goecks
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72921fcad3
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Trackster bug fixes: (a) fix 1-base offset bug in LineTracks; (b) fix overview track resolution calculation; and (c) code cleanup via JSHint.
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2012-07-31 11:55:41 -04:00 |
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James Taylor
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a6e8a66317
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tooltips: use a special even to remove tooltips automatically when their element is deleted. fix the bug deleting datasets from this history.
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2012-07-25 17:08:38 -04:00 |
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Jeremy Goecks
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97ffa48a2b
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Add bigwig/bigbed support to Circster. Pack scripts.
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2012-07-24 14:28:08 -04:00 |
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Jeremy Goecks
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15e2cc247d
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Rename paramamonster as sweepster and use bootstrap tooltips in sweepster.
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2012-07-24 14:21:40 -04:00 |
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Jeremy Goecks
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134a5ad252
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Trackster: only draw connector when both mates of a read are drawn; this prevents spurious connectors from being drawn but prevents connectors from being drawn across tile boundaries.
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2012-07-24 14:07:06 -04:00 |
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James Taylor
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901b042c0b
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Add bootstrap transition to bootstrap.js, makes animations much more tolerable
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2012-07-20 16:43:13 -04:00 |
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James Taylor
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3118446f4e
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tooltips: Replace all uses of tipsy with bootstrap style (with the same modifications for placement we previously used for tipsy). This will allow us to start using popovers
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2012-07-20 16:28:23 -04:00 |
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James Taylor
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96f6ea514b
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Add support for bootstrap style tabs, use tabs in edit attributes form
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2012-07-20 14:53:30 -04:00 |
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James Taylor
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25325e9208
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Automated merge with https://bitbucket.org/galaxy/galaxy-central
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2012-07-19 13:56:48 -04:00 |
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Jeremy Goecks
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6a591eb48b
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Viz framework: bigwig fixes and remove unnecessary type casting.
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2012-07-19 10:59:20 -04:00 |
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James Taylor
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ccfc8ce3a7
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Automated merge with https://bitbucket.org/galaxy/galaxy-central
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2012-07-18 18:22:52 -04:00 |
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Jeremy Goecks
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9b2ec24928
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Reintroduce directionality indication to single-block features as it is again compatible with current code.
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2012-07-18 17:52:54 -04:00 |
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