 peterjc
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2956f94aa0
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BLAST database *.loc.sample files
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2016-11-04 17:00:13 +00:00 |
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Dave Bouvier
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a3018feb02
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Migrate 22 tools from the distribution to the tool shed.
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2014-05-19 13:01:46 -04:00 |
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Dannon Baker
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c0c286a9c6
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Convert loc file examples to use tabs instead of spaces.
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2012-03-23 08:59:34 -04:00 |
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Kelly Vincent
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7d0ff14df9
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Converted several tools to data table style of loc file handling (Bowtie, BWA, Lastz, Megablast, PerM, SRMA). Cleaned up several tool XML files, removing unnecessary None parameters.
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2010-11-08 00:10:13 -05:00 |
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Peter Cock
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7c69382bbc
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Introduce blastdb_p.loc for protein BLAST databases
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2010-09-21 17:05:24 +01:00 |
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Peter Cock
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4a013963b2
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Update comments in blastdb.loc.sample for intended usage
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2010-09-21 17:01:19 +01:00 |
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Kelly Vincent
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ebc67a6bc7
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Updated megablast_wrapper tool to allow for date to be included with database name and displayed (so user knows how current it is)
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2009-12-09 18:50:12 -05:00 |
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Greg Von Kuster
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f931001667
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Added more information to the sample .loc files, fixed a typo in extract genomic dna tool.
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2008-06-30 18:02:53 +00:00 |
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Wen-Yu Chung
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31546f5988
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update blastdb.loc sample file.
use this file to pass functional test.
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2008-04-02 20:51:48 +00:00 |
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Wen-Yu Chung
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78802fa73b
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add scripts for preparing nt and wgs databases.
update blastdb location file, wgs is available now.
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2008-03-27 17:41:40 +00:00 |
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Wen-Yu Chung
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3c1037f13b
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update blat and megablast wrapper. change blastdb.loc file, now don't need all chunks id.
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2008-03-26 16:01:40 +00:00 |
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Greg Von Kuster
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cd52cabd48
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Eliminated hard-codes paths to locally cached data from tools, requires developers to add softlinks to development environments.
Galaxy developers should execute the following commands in their $UNIVERSE_HOME/tool-data directories:
ln -s /depot/data2/galaxy/alignseq.loc alignseq.loc
ln -s /depot/data2/galaxy/binned_scores.loc binned_scores.loc
ln -s /depot/data2/galaxy/blastdb.loc blastdb.loc
ln -s /depot/data2/galaxy/encode_datasets.loc encode_datasets.loc
ln -s /depot/data2/galaxy/liftOver.loc liftOver.loc
ln -s /depot/data2/galaxy/maf_index.loc maf_index.loc
ln -s /depot/data2/galaxy/maf_pairwise.loc maf_pairwise.loc
ln -s /depot/data2/galaxy/microbes/microbial_data.loc microbial_data.loc
ln -s /depot/data2/galaxy/phastOdds.loc phastOdds.loc
ln -s /depot/data2/galaxy/quality_scores.loc quality_scores.loc
ln -s /depot/data2/galaxy/regions.loc regions.loc
ln -s /depot/data2/galaxy/twobit.loc twobit.loc
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2008-03-21 18:31:39 +00:00 |
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