Commit Graph
8 Commits
Author SHA1 Message Date
Greg Von Kuster b3aa4efa6f Cleaned up functional tests, eliminating some redundant tests and unused test data files. Next step, add many missing tests. 2007-10-03 14:17:41 +00:00
Greg Von Kuster 4c6dab39eb Enhanced upload utility to dynamically load the File Format select list using values from the registry's datatypes_by_extension dictionary. 2007-09-27 14:12:01 +00:00
Chinmay Rao 18e2c28a45 Added support for gff3 datatype 2007-09-18 15:43:44 +00:00
Greg Von Kuster a7336bfaa5 Support for Gff version 3 which will be coming from GMOD applications (wormbase, hapmap, etc). 2007-06-26 15:43:57 +00:00
Greg Von Kuster 401e30e2c5 Requires db schema change. Enhance upload tool to default to the last build used in the "current" history.
Database changes required:
alter table history add genome_build varchar(40);

There is now a new tool ToolParameter named GenomeBuildParameter which should be useful in several existing tools.

Also took care of some other miscellaneous items.
2007-04-19 20:53:16 +00:00
Greg Von Kuster e34fff8ff8 Added a corner-case fix for auto-detect file formats. Updated info displayed to user on upload and filter tools and added more valid words to filter tool. 2007-03-23 17:46:06 +00:00
Daniel Blankenberg 74784e1755 Pushing my changes from james-wsgi branch onto the trunk.
Biomart doesn't work on the trunk yet (Before or after this commit).

axt to lav tool won't be functional until multiple datasets per history item is available on trunk - although I could
make it so that only the lav file is generated and no fasta files, in which case it wouldn't be an issue.
2006-12-14 21:02:17 +00:00
James Taylor f788a34fca Moving james-wsgi branch to new trunk. 2006-11-15 16:28:21 +00:00