Dannon Baker
61decad8c3
Bump SQLAlchemy all the way to 0.9.8
2015-02-16 15:09:42 -05:00
Dannon Baker
d3c2771dae
Initial update of SQLAlchemy to 0.8.7. Definitely still needs testing.
2015-02-14 10:16:13 -05:00
Nate Coraor
18ecd47b67
Remove GeneTrack tag from eggs.ini as well.
2015-02-02 13:42:29 -05:00
Martin Cech
c34eddacef
degrade Whoosh egg to 2.4.1, adjust util fnc for pretty intervals
...
remove debugs
2015-01-30 13:21:35 -05:00
Dannon Baker
dba89dff83
Convert everything from elementtree to stdlib xml module.
2015-01-29 16:10:56 -05:00
Nate Coraor
29dda3e11a
Remove GeneTrack remnants.
2015-01-28 16:29:21 -05:00
Nate Coraor
23f3e479be
Remove memdump, which probably has not worked for many years.
2015-01-28 16:20:30 -05:00
Dannon Baker
88bd4475ad
Add (new) repoze.lru dependency of Routes 2.1.
2015-01-21 11:08:07 -05:00
Dannon Baker
666a2b58ab
merge.
2015-01-21 10:46:39 -05:00
Dannon Baker
ddbe00c532
Update Routes egg to 2.1. This is an attempt to fix the intermittent url_for issues seen on main.
2015-01-21 10:46:06 -05:00
Martin Cech
045da43e46
update whoosh; this most probably breaks data library whoosh search
...
the issue will be addressed subsequently
2015-01-20 10:27:39 -05:00
Dannon Baker
3298c40649
Add six egg for John. It'll be in use soon.
2015-01-15 12:23:33 -05:00
Dannon Baker
953a2ecf86
Bump bioblend to 0.5.2. The egg no longer depends on mock, which is sort of a bandaid fix for the startup eggs dependency bug not fetching it correctly. TODO: followup on that bug.
2015-01-15 11:59:20 -05:00
Dave Bouvier
a9acbd6df5
Upgrade mercurial egg to 3.2.4.
2015-01-07 13:48:17 -05:00
Dan Blanchard
6f53287193
Update DRMAA Python version in eggs.ini to 0.7.6.
...
This version has better string handling and supports Python 3.
2014-06-16 13:27:38 +00:00
Nate Coraor
4768c9de15
Drop threadframe for heartbeat (its functionality was integrated in sys in Python 2.5...)
2014-06-12 09:51:45 -04:00
Nate Coraor
5a460288df
Upgrade kombu/amqp to fix ssl disconnect on consumer timeout bug: https://github.com/celery/py-amqp/pull/38
2014-06-05 10:07:39 -04:00
Dannon Baker
fceadaf1f2
Kombu also requires ordereddict backport to support python2.6, more eggs.
2014-05-19 18:58:13 -04:00
Dannon Baker
c05bef0908
Add conditional requirement of importlib for python 2.6/kombu.
2014-05-19 18:11:52 -04:00
Dannon Baker
87131537f9
Add simplejson back again until 'anyjson' changes are pushed through bioblend.
2014-04-24 11:03:23 -04:00
Dannon Baker
fb10c696a8
Add mock, poster eggs. Both may go away depending on which way bioblend goes w/ deps, but it keeps things working for now.
2014-04-23 17:07:39 -04:00
Dannon Baker
a329745571
Merge.
2014-04-21 17:10:48 -04:00
Dannon Baker
e5052df2a4
Convert cloudlaunch over to bioblend egg/launching, unifying the two approaches. The bioblend codebase will be where improvements (vpc, etc) happen moving forward.
2014-04-21 17:10:23 -04:00
Nate Coraor
f82e997a8f
Update bx-python to 0.7.2
2014-04-15 13:32:31 -04:00
Nicola Soranzo
f73d5fba6c
Fix old wiki links.
2014-04-10 20:00:45 +02:00
John Chilton
9ca58431e3
Add dependency on requests 2.2.1.
...
Will improve and fix bugs in API testing and API driven tests of tools.
2014-03-20 10:43:24 -05:00
Dannon Baker
72f2a1b5bd
Update boto to 2.27.0 -- thirequired update to support VPC support that worked incorrectly in previous versions.
2014-03-18 11:04:55 -04:00
Dannon Baker
cc03a9b144
Add PyYAML 3.10 egg.
2014-02-20 13:10:00 -05:00
Nate Coraor
38f36eb88f
Remove obsolete DRMAA_python egg from eggs.ini.
2014-02-20 10:51:42 -05:00
Dannon Baker
c6d9b53ce5
Update boto to 2.25.0 in anticipation of supporting VPC
2014-02-19 19:33:27 -05:00
Dannon Baker
7474579310
Swap amqplib for amqp. This was mostly a drop-in replacement, since it's a currently-maintained fork of amqplib, with slight updates to work with amqp 0-9-1.
2014-02-19 14:27:10 -05:00
Dannon Baker
31a190424a
Add kombu, amqp, anyjson eggs.
2014-02-18 11:47:23 -05:00
Dannon Baker
a48f25f397
Update guppy egg to 0.1.10. This resolves issues encountered on particular platforms ( http://sourceforge.net/p/guppy-pe/bugs/10/ )
2014-01-31 09:29:24 -05:00
Dannon Baker
2ad0bfae20
Add pytz egg.
2014-01-31 09:26:07 -05:00
Dannon Baker
f257a11448
Upgrade Babel egg from 0.9.4 to 1.3. This resolves several known issues with utf-8 for particular distributions.
2014-01-31 07:43:28 -05:00
Dannon Baker
2c7b758b32
Eliminate simplejson for real this time. Update WebHelpers to v 1.3 (no longer requires simplejson), fix deprecated methods.
2014-01-13 10:54:20 -05:00
Dannon Baker
d85edddba1
Temporarily add simplejson back until webhelpers is updated
2014-01-10 14:22:03 -05:00
Dannon Baker
559ecb4ec8
Remove dependency on simplejson; convert everything over to using the json module in the python standard library.
2014-01-10 07:29:05 -05:00
Nate Coraor
e36ec9b5e8
Upgrade psycopg2 to 2.5.1 (statically linked to PostgreSQL 9.2.4).
2013-09-23 18:45:58 -04:00
Nate Coraor
2dae23f29c
Update drmaa to 0.6
2013-09-23 15:08:34 -04:00
Dave Bouvier
1011312308
Add paramiko egg, which fabric 1.7 depends on.
2013-09-23 11:43:06 -04:00
Dave Bouvier
2dc4bad29b
Upgrade Fabric egg to 1.7.0.
2013-09-23 11:04:52 -04:00
Nate Coraor
126c02eb71
Experimental/alpha/in-development/incomplete object store plugin for iRODS. This plugin will probably set your iRODS instance on fire: do not use except in development/testing.
2013-08-28 16:20:19 -04:00
Nate Coraor
828c4953f5
Upgrade pbs_python to 4.3.5
2013-07-02 04:13:02 -04:00
Dannon Baker
c2e71bc003
Postgres migrations successful, model updated
2013-04-18 15:35:00 -04:00
Dannon Baker
924d0a0896
Add Parsley egg prior to merging search API.
2013-04-09 13:20:29 -04:00
James Taylor
d02155ad7b
Require Python 2.6+ and remove various compatibility patches for 2.4 and 2.5
2013-04-09 11:57:38 -04:00
James Taylor
ba20ad1c18
eggs: Update Paste and PasteDeploy
2013-02-04 23:30:32 -05:00
James Taylor
56a81d0134
Support for using Sentry for error logging. If sentry_dsn is set in
...
universe_wsgi.ini, then:
- A middleware will be installed that send thrown exceptions to sentry
- All logging messages of level WARN and above will be sent to sentry
- All pages extending base/base_panels will have javascript errors
captured and sent to sentry
2013-02-02 17:56:55 -05:00
James Taylor
15ec130bfb
core: add PasteDeploy dependency back, used inside Paste#httpserver
2013-02-01 17:30:58 -05:00
Dannon Baker