Aysam Guerler
6cc810345b
Enhance button for trackster visualization in data display viewer
2013-04-09 13:59:56 -04:00
Aysam Guerler
1633386bfc
Inserted a button for trackster visualization into the BED-file data display viewer.
2013-04-08 10:19:37 -04:00
Carl Eberhard
4477aeab85
history panel: do not fetch display apps if there are no hdas yet
2013-04-05 14:01:59 -04:00
Carl Eberhard
b02f3851e9
history panel: fix test for partial/full render of hdas to prevent 'blinking'2
2013-04-05 13:50:24 -04:00
Dannon Baker
d9040ccb99
Workflow Editor: Fix for last-remaining-workflow-output-unremovable. Clarify declaration (actually a bug, one was undefined, one was false).
2013-04-03 17:46:19 -04:00
Carl Eberhard
a4ec54d727
re-run handlebars on available templates; pack scripts
2013-04-03 17:20:01 -04:00
Carl Eberhard
255e2d516f
update handlebars.runtime.js 1.0.beta.6 -> 1.0.rc1
2013-04-03 17:15:05 -04:00
Carl Eberhard
c8cfcc2fb3
That went well. (rollback changes to backbone, backbone-relational, and handlebars.runtime to not break every possible thing)
2013-04-02 14:41:29 -04:00
Carl Eberhard
ce6c114c6a
update js libs: underscore 1.3.1 -> 1.4.4, backbone 0.9.2 -> 1.0, backbone-relational 0.5.0 -> 0.8.0, handlebars 1.0.beta.6 -> 1.0.rc1
2013-04-02 14:27:23 -04:00
Carl Eberhard
96f5b1854e
pack_scripts.py: have yuicompressor use utf-8 as the charset; remove unused packed scripts; update d3.js from 2.9.2 to 3.1.4
2013-04-02 14:20:55 -04:00
Carl Eberhard
422281a252
pack scripts
2013-04-01 11:20:18 -04:00
Carl Eberhard
7549fea5d2
history panel: load display applications via ajax, update on force_history_refresh instead of reloading frame
2013-04-01 11:10:08 -04:00
Dannon Baker
8a747d1e65
Merged in galaxyp/galaxy-central-parallelism-refactorings (pull request #136 )
...
select2 fixes for workflow running.
2013-03-27 11:53:18 -04:00
Jeremy Goecks
ade0bcad06
Trackster: more flexible parsing of location string.
2013-03-25 09:37:17 -04:00
Jeremy Goecks
e08e2f5cba
Simplify help text for eye icon.
2013-03-20 13:18:13 -04:00
Jeremy Goecks
e45a787716
Trackster fixes: (a) render bases/colors in Firefox; (b) make deletions black to avoid color conflicts with colored bases; (c) use group name for composite track. Modal fix: set maximum body height so that it does not overflow the bottom of the page. Pack scripts.
2013-03-20 10:55:24 -04:00
Aysam Guerler
3dd22cf745
Fixed: No confirm on delete permanently (footer button), saved histories
2013-03-15 14:32:30 -04:00
Carl Eberhard
2aefbcdcd3
history panel: remove display, edit, and delete buttons from hdas in the new state; pack scripts
2013-03-12 16:14:37 -04:00
Carl Eberhard
4c5f98a28c
history panel: have 'new' state HDAs display their body properly
2013-03-12 10:42:41 -04:00
John Chilton
5a1fbd832b
Abstract away logic for updating select boxes. For multiple select boxes set closeOnSelect to false, this vastly reduces the clicking required to select many items.
2013-03-07 13:42:11 -06:00
Carl Eberhard
ac34fddc56
history panel and api: if hda.peek is 'no peek' do not send peek through api and do not render peek in expanded hda
2013-03-06 10:02:24 -05:00
Jeremy Goecks
e84d447d07
Trackster: (a) handle corner case when feature starts at tile boundary and (b) remove poor tile index usage. Pack script.
2013-03-01 16:18:23 -05:00
Jeremy Goecks
5be04ef7b9
Trackster: standardize start and end of regions to fall between bases.
2013-02-28 22:54:11 -05:00
Jeremy Goecks
15ca057151
Pack scripts.
2013-02-28 16:55:33 -05:00
Jeremy Goecks
9c97ac4854
Trackster enhancements: (a) rename reference data manager to more appropriate name; (b) fetch reference data more readily so that variants can be drawn even when not zoomed way in; and (c) use base letters to denote variants only when there is sufficient room.
2013-02-28 16:54:26 -05:00
Jeremy Goecks
b7543d7120
Trackster: (a) color reference bases and (b) color variants when reference data is available.
2013-02-28 16:27:31 -05:00
Jeremy Goecks
a5f4b13c98
Trackster: add subsetting functionality to data manager and enable subsetting for line tracks.
2013-02-21 17:10:54 -05:00
Jeremy Goecks
101bf55dd0
Trackster: performance improvements for drawing reference track data.
2013-02-21 14:37:38 -05:00
Jeremy Goecks
1791c8f57c
Trackster: subset reference data when available.
2013-02-21 14:11:09 -05:00
Jeremy Goecks
6ebb660cba
Trackster: prevent data requests for very small regions by using a (configurable) minimum region size. This improves performance when zoomed in on small regions. Pack scripts.
2013-02-19 10:16:21 -05:00
Jeremy Goecks
dde00ed000
Small fixes for trackster resolution calculation.
2013-02-19 08:56:32 -05:00
Jeremy Goecks
283cb406f9
Move grid element initialization to main body to prevent it from happening too early. Pack scripts.
2013-02-17 14:59:02 -05:00
Jeremy Goecks
4f8e9afa7f
Use strict equality operators.
2013-02-15 12:44:08 -05:00
Jeremy Goecks
e3843d0279
Use 0-based coordinates for BBI data and display.
2013-02-14 18:56:27 -05:00
Jeremy Goecks
990297a3d5
More Trackster fixes to standardize on 0-based coordinate system.
2013-02-14 18:31:21 -05:00
Jeremy Goecks
ad07491b37
Standardize on BED format for genome data providers and fix off-by-one issues.
2013-02-14 18:15:34 -05:00
Jeremy Goecks
53352f18b0
Grid framework fixes, including extension of sanitize_text to work with lists of text.
2013-02-14 13:48:52 -05:00
Carl Eberhard
12dbbbf805
Fix to trackster/util.js exports; Fix to docstring in history_contents; Fix alert text in hda-model
2013-02-12 14:26:30 -05:00
Jeremy Goecks
a52ae86a3f
Pack scripts.
2013-02-12 12:01:37 -05:00
Jeremy Goecks
9413818c13
Use tabular chunked data diplay for shared/published datasets.
2013-02-11 15:56:50 -05:00
Jeremy Goecks
6ba5e76ccf
More refactoring for tabular data display.
2013-02-11 12:05:50 -05:00
Jeremy Goecks
e6235d12f3
Minor refactoring that simplifies creation of tabular chunked display.
2013-02-11 10:17:53 -05:00
Carl Eberhard
7e6d58585e
history panel: fix to hda update logging typo
2013-02-06 12:05:56 -05:00
Jeremy Goecks
e4ff2da11b
Refactor tabular chunked display into Backbone and use for displaying tabular data.
2013-02-04 12:37:32 -05:00
Carl Eberhard
9d6d64684b
history panel: ensure deleted or purged datasets are considered ready to the updater; pack scripts
2013-02-04 12:14:23 -05:00
James Taylor
260228e8b1
Add some missing files
2013-02-03 23:22:16 -05:00
James Taylor
56a81d0134
Support for using Sentry for error logging. If sentry_dsn is set in
...
universe_wsgi.ini, then:
- A middleware will be installed that send thrown exceptions to sentry
- All logging messages of level WARN and above will be sent to sentry
- All pages extending base/base_panels will have javascript errors
captured and sent to sentry
2013-02-02 17:56:55 -05:00
Jeremy Goecks
0a82687368
Remove debugging statement.
2013-02-01 17:49:25 -05:00
James Taylor
6bcbe88102
Use the select2 library for large select boxes rather than our custom
...
implementation based on jquery autocomplete.
2013-02-01 16:49:16 -05:00
Jeremy Goecks
517fb61e20
Fixes for 149f0fc and pack scripts.
2013-01-30 10:54:15 -05:00
Aysam Guerler