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37,622 Commits 69 Branches 243 Tags
6703584714507f129fee6e967df875bfa6027fc0
Commit Graph
692 Commits
Author SHA1 Message Date
Sergey Golitsynskiy 6703584714 Fix link to requirements.txt 
Dependency files rearranged (commit 1b0ccf6, Nov. 1, 2017)
 2018-11-30 19:26:41 -05:00
Sergey Golitsynskiy 03794ce21a Fix broken links on Job Configuration page 2018-11-08 11:52:31 -05:00
Nicola Soranzo e4c00af38d Merge branch 'release_18.09' into dev 2018-11-08 09:32:30 +00:00
mvdbeek 5e098857e5 Display test collection input in documentation 2018-11-07 20:08:21 +01:00
John Chilton c312c1014d Merge pull request #6937 from natefoo/shed-tools-relocate 
Default shed tool installation to database/shed_tools
 2018-11-01 10:22:05 -04:00
Martin Cech 31905f1402 Merge pull request #6917 from dannon/unified_webpack4 
Unified webpack4
 2018-10-31 14:52:32 -04:00
Nicola Soranzo b47efd4ade Merge branch 'release_18.09' into dev 2018-10-31 09:38:34 +01:00
Dannon Baker 51273658fb Merge remote-tracking branch 'upstream/dev' into unified_webpack4 2018-10-30 11:06:24 -04:00
Dannon Baker 4dce069209 Adjust code block to try to fix release doc formatting -- I hate RST 2018-10-29 13:00:34 -04:00
Nate Coraor c3dfdb0dc7 Default shed tool installation to database/shed_tools instead of 
../shed_tools
 2018-10-29 12:15:42 -04:00
Dannon Baker 6f6fffe913 Merge remote-tracking branch 'upstream/release_18.09' into dev 2018-10-29 10:24:47 -04:00
Dannon Baker 1fd1848a81 Additional 18.09 bugfix 2018-10-29 09:49:02 -04:00
Dannon Baker 79cff3ea6b Add 18.09_announce to releases index. 2018-10-26 14:23:08 -04:00
John Chilton 4919805f81 Merge pull request #6924 from natefoo/quiesce-handler 
Be more precise with the job runner worker thread join timeout and improve documentation
 2018-10-26 09:48:33 -04:00
Nate Coraor 7c6b184557 Clarify that maximum job runner worker shutdown time is a multiple of 
`monitor_thread_join_timeout` based on the configured number of runner
plugins.
 2018-10-25 15:10:08 -04:00
Dannon Baker 5076f1d2d1 Merge branch 'release_18.09' into dev 2018-10-25 14:57:20 -04:00
Nate Coraor 33c3b74bf5 Increase the value of monitor_thread_join_timeout to 30 now that it is 
the total wait time. Add more documentation about it and the uWSGI and
supervisord options that changing it will have an effect upon.
 2018-10-25 14:52:10 -04:00
Nate Coraor 3263aba44a Add a warning to the 18.09 release notes informing admins that job 
handling will block until old `new` state jobs have been migrated to a
terminal state.
 2018-10-25 12:08:37 -04:00
Dannon Baker 17f4f7955f s/sources/artifacts 2018-10-25 11:58:53 -04:00
Dannon Baker b6e716b289 Correct javascript caps 2018-10-25 10:37:45 -04:00
Dannon Baker 5a71a744ed Add client artifact note 2018-10-25 10:36:38 -04:00
Dannon Baker 6a072ab29d Four more RN PRs. 2018-10-25 10:14:44 -04:00
John Chilton 096fe9b7b9 Merge pull request #6909 from nsoranzo/error_reports 
Update Bug Reports docs to use YAML syntax
 2018-10-23 18:51:33 -04:00
Nicola Soranzo 02c71e2429 Merge branch 'release_18.09' into dev 2018-10-23 14:37:09 +01:00
Nicola Soranzo cbf8a6658d Update Bug Reports docs to use YAML syntax 2018-10-23 12:43:13 +01:00
Nicola Soranzo 4dd2ecb13f Fix `make config-validate` 2018-10-23 12:28:47 +01:00
Martin Cech fa212c3c31 specify which gemini tools were fixed 2018-10-17 11:45:25 -04:00
Martin Cech 9735146f28 add discovered tool vulnerabilities to RN 2018-10-17 10:53:09 -04:00
Dannon Baker d19effdf3c One last batch of PRs. 2018-10-17 08:36:33 -04:00
Dannon Baker db67cd2f56 Merge remote-tracking branch 'upstream/dev' into webpack_4_minimal_flat 2018-10-15 14:51:41 -04:00
Nicola Soranzo 4e0f814f61 Add documentation for `conda_use_local` config directive 2018-10-12 09:57:53 +01:00
Nicola Soranzo 91a3954307 Index `finding_and_improving_slow_code` page in dev docs 2018-10-12 09:57:46 +01:00
Nicola Soranzo 5e71401a7e Merge branch 'release_18.09' into dev 2018-10-12 09:47:34 +01:00
Nicola Soranzo 9251484e72 Merge pull request #6731 from galaxyproject/18.09_release_notes 
[18.09] 18.09 release notes
 2018-10-11 17:56:33 +01:00
Nicola Soranzo d42b899b78 Embellish 18.09 release notes 2018-10-11 17:51:07 +01:00
Dannon Baker d33006cf33 Final docs update 2018-10-11 12:28:32 -04:00
Dannon Baker f116cb8de8 Drop more grunt cruft 2018-10-11 11:35:26 -04:00
Dannon Baker 7cb2eb57ac Merge branch '18.09_release_notes' of github.com:galaxyproject/galaxy into 18.09_release_notes 2018-10-11 10:38:15 -04:00
Dannon Baker c6193ca440 Update DEVTEAM, rebuild, include a few new PRs. 2018-10-11 10:37:54 -04:00
Nicola Soranzo c1383bc2d5 Small fixes 2018-10-11 15:22:23 +01:00
Martin Cech c9b0379230 Merge pull request #6846 from thobalose/docs 
Updated GIE docs
 2018-10-10 13:15:15 -04:00
thobalose 2cacb69d97 en-US spelling 2018-10-10 17:56:03 +02:00
thobalose 3b3215138f Updated GIE build docs. 2018-10-10 15:06:32 +02:00
thobalose 292197386b Added NVM to manage multiple node versions. 2018-10-10 15:06:32 +02:00
thobalose 848196732d Updating GIE build docs. 2018-10-10 15:06:07 +02:00
Nicola Soranzo afa7299705 Merge branch 'release_18.09' into dev 2018-10-10 10:11:13 +01:00
Dannon Baker 381d6ad831 Add two recently merged PRs. 2018-10-08 15:25:57 -04:00
Nicola Soranzo 9b6833b5a0 make config-rebuild 2018-10-08 11:03:46 +01:00
Nicola Soranzo c83c5cb784 Change conda channel priority: conda-forge > bioconda 
xref. https://github.com/bioconda/bioconda-utils/issues/330
 2018-10-08 11:02:23 +01:00
pvanheus a5d794dc4d Add docs about running jobs in containers 
Explain how jobs can be run in containers (something currently documented in the `job_conf.xml.sample_advanced` file)
 2018-10-05 15:49:47 +02:00