John Chilton
b84da7a07a
Allow per-request SQL debugging via URL parameter.
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This has been super helpful in debugging the SQL generated by Galaxy for recent PRs.
To use this simply enable the middleware, use your browser's network logger to find the URL of interest, copy the URL into the browser address bar and add ``?debug_sql=1`` to it. You will then see the sql in the logs only for that request and for every statement in that request.
Simply turning all logging on results in a deluge of logging I've never been able to grok and that is very hard to ping to particular request. Slow request logging is great but it doesn't make this kind of per-query full profile of the SQL generated as easy as this approach and isn't great at debugging performance problems when the result from a large number of small requests (you'd have to set a very low threshold to make sure you are logging every query and then it is no different from the full log).
2018-02-18 13:37:19 -05:00
Nicola Soranzo
6f2a0cceb0
Unify config-rebuild Makefile targets
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Rebuild reports sample and RST from schema with the new Makefile target.
2018-02-08 10:16:58 -05:00
Dannon Baker
8ce7f96353
Rebuild rst for new configuration options
2018-02-08 08:16:46 -05:00
Anthony Bretaudeau
4dbfd50f06
Merge branch 'dev' into i18n
2018-02-07 09:40:19 +01:00
Nicola Soranzo
245394acb6
Merge branch 'release_18.01' into dev
2018-02-02 22:19:02 +00:00
Martin Cech
f24043e8a7
Merge pull request #5441 from natefoo/framework-dependencies-doc-update-18.01
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[18.01] Admin doc corrections
2018-02-01 16:38:50 -05:00
Nate Coraor
6d8edce331
Admin doc corrections
2018-02-01 16:25:12 -05:00
Martin Cech
b4cdce925b
Merge branch 'release_18.01' into dev
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I removed the conflicted file that was modified
in dev after removal in 18.01
2018-02-01 15:57:38 -05:00
Martin Cech
ffaabe0a63
Merge pull request #5342 from dannon/integration.webhooks_improvements
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[18.01] Webhooks improvements
2018-02-01 15:14:47 -05:00
Martin Cech
a37b638491
Merge pull request #5390 from natefoo/framework-dependencies-doc-update
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[18.01] Update framework dependencies documentation
2018-02-01 15:00:15 -05:00
Evgeny Anatskiy
29c766167a
update webhooks docs
2018-02-01 12:22:21 -05:00
Nicola Soranzo
da002bdf44
Merge branch 'release_18.01' into dev
2018-01-31 11:46:53 +00:00
Nicola Soranzo
5b23c0e87d
Merge branch 'release_17.09' into release_18.01
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Conflicts:
client/galaxy/scripts/mvc/workflow/workflow-node.js
config/galaxy.ini.sample
static/maps/mvc/workflow/workflow-node.js.map
static/scripts/mvc/workflow/workflow-node.js
2018-01-31 10:38:53 +00:00
Nicola Soranzo
c0c95548a3
Merge branch 'release_17.05' into release_17.09
2018-01-31 10:16:33 +00:00
mvdbeek
a70f2875b3
Remove r channel from more locations
2018-01-29 18:07:29 +01:00
Nate Coraor
6333e83a65
Doc corrections from @nsoranzo
2018-01-26 10:18:53 -05:00
Nate Coraor
fd96864bd6
Finish updates to framework dependencies doc
2018-01-25 12:36:11 -05:00
Nate Coraor
6bdd755aaf
WIP framework dependencies doc update
2018-01-25 12:36:11 -05:00
Nicola Soranzo
e87d1aa79d
More Python3 print function fixes
2018-01-25 11:52:11 +01:00
Nate Coraor
ebafd19575
Merge pull request #5138 from scholtalbers/feature/auto_create_userfolder
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Add option to auto create user_library_import_dir directories upon user login
2018-01-22 11:27:19 -05:00
Nate Coraor
dea3b73dd2
Merge remote-tracking branch 'origin/dev' into feature/populate_ldap_user
2018-01-19 11:45:33 -05:00
Nate Coraor
ea7dbd1906
Merge remote-tracking branch 'origin/dev' into feature/auto_create_userfolder
2018-01-19 11:39:30 -05:00
Anthony Bretaudeau
3f2f5e6af4
doc/schema
2018-01-19 12:39:50 +01:00
Nate Coraor
3fdbaa3dec
Regenerate galaxy.yml.sample and documentation for newly
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added/documented config options.
2018-01-18 12:31:41 -05:00
Nate Coraor
44c291bc66
Merge remote-tracking branch 'origin/dev' into ini_to_yaml_config
2018-01-18 12:30:05 -05:00
Nate Coraor
efb061d4d4
Add a tiny bit about uwsgitop
2018-01-12 16:51:37 -05:00
Nate Coraor
5fcefe404f
Attempt to reduce duplication in the proxy documentation through the use
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of includes, move the multi-config-file discussion to a common page.
2018-01-12 16:44:40 -05:00
Nate Coraor
f4131b8d2b
Correct doc typos caught by @nsoranzo
2018-01-12 10:45:50 -05:00
Nate Coraor
78992968ec
Correct documentation line endings
2018-01-11 16:40:05 -05:00
Nate Coraor
5a0d60537c
Update Apache documentation for uWSGI
2018-01-11 16:38:48 -05:00
Nate Coraor
1b583fb851
Update nginx documentation for uWSGI
2018-01-11 13:56:23 -05:00
Nate Coraor
35b1e2c9e7
Correct the handlers section of the job conf documentation.
2018-01-10 16:47:09 -05:00
Nate Coraor
1e275e84f8
Add loggging configuration to admin docs TOC and move the cluster docs
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after the scaling docs
2018-01-10 16:28:00 -05:00
Nate Coraor
db00f97175
Finish Galaxy logging configuration documentation
2018-01-10 16:26:09 -05:00
Nate Coraor
9204916ac8
Galaxy config doc corrections
2018-01-10 16:23:54 -05:00
Nate Coraor
18b3599207
Remove emperor mode reference
2018-01-10 16:20:11 -05:00
selten
f1f6a19a0f
#5291 Changed text, removed Admin/GetGalaxy
2018-01-10 18:15:17 +01:00
selten
15bc610cf0
#5291 fix link to HTTP getgalaxy.org
2018-01-10 18:12:32 +01:00
Nate Coraor
36ecca47e7
Major updates to the scaling doc for uWSGI
2018-01-09 18:21:22 -05:00
John Chilton
9c77936515
Adjust note about nginx enabled sites configuration
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Originally implemented by @scholtalbers in https://github.com/galaxyproject/galaxy-hub/pull/355 .
2018-01-03 10:37:04 -05:00
Nicola Soranzo
6d3eadedbd
Merge pull request #5227 from jmchilton/merge_1709
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Merge 17.09.
2017-12-15 18:14:34 +00:00
John Chilton
90ba35a9a4
Merge remote-tracking branch 'jmchilton/release_17.09' into merge_1709
2017-12-15 12:02:07 -05:00
Nicola Soranzo
18221ae931
paster.pid/log to galaxy.pid/log reference update
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Fix errors in `first_startup` jobs:
https://travis-ci.org/galaxyproject/galaxy/jobs/316342622#L1029
Introduced in https://github.com/galaxyproject/galaxy/pull/4475
2017-12-15 15:34:47 +00:00
Nate Coraor
8cf649b331
WIP admin docs updates for 18.01
2017-12-07 16:47:52 -05:00
Nate Coraor
0664921e00
WIP admin documentation updates
2017-12-07 11:28:41 -05:00
John Chilton
0585efaaa7
Update newer deployer config docs for switch to YAML config.
2017-12-06 20:57:09 -05:00
John Chilton
c99b4ece5b
[17.09] Deployer doc fixes.
2017-12-06 20:28:41 -05:00
John Chilton
cec42d1656
yaml_config - Update Conda FAQ to link out to last .ini variant of docs for those who need them.
2017-12-06 20:28:21 -05:00
John Chilton
ba35d474a0
yaml_config - update admin docs for switch to YAML config.
2017-12-06 20:28:20 -05:00
John Chilton
4f4928b386
yaml_config - Add RST docs for Galaxy options.
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Automatically generated from the new specification.
2017-12-06 20:28:20 -05:00
John Chilton