Nicola Soranzo
575a1d8358
Merge pull request #14430 from bernt-matthias/unlink-job-template
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Deprecate `cluster_files_directory` and store DRMAA job template and PBS shell, error and out files in job working directory
2022-08-13 01:00:10 +01:00
Dannon Baker
3112181f3e
Merge remote-tracking branch 'upstream/release_22.05' into dev
2022-08-12 13:18:53 -04:00
Matthias Bernt
b81b2f827e
remove more leftover references to cluster_files_directory
2022-08-12 16:07:35 +02:00
mvdbeek
728ceebc8a
Fix nested archive unzipping on windows
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We need the directory markers in order for the default windows zip
utility to be able to extract the archives. Also requires
https://github.com/evanmiller/mod_zip/commit/51cf45d3e9f51e02224af017b235d1d30fbf28fb
or newer on the mod_zip side.
2022-08-10 17:33:29 +02:00
mvdbeek
a351bd1ce9
Merge branch 'release_22.05' into dev
2022-08-09 15:12:15 +02:00
Cameron Hyde
ffb9b34d89
Update config schema descriptions for tool search
2022-07-28 17:32:32 -05:00
Cameron Hyde
2ca6e7353b
Add new config params for tool search
2022-07-28 17:29:58 -05:00
M Bernt and Nicola Soranzo
ed5bdcefec
Apply suggestions from code review
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2022-07-04 14:27:29 +02:00
Matthias Bernt
a75e17e081
move to new top level category
2022-07-01 17:33:13 +02:00
M Bernt and Martin Cech
fe10f76aba
Update doc/source/admin/production.md
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Co-authored-by: Martin Cech <cech.marten@gmail.com >
2022-07-01 14:07:36 +02:00
M Bernt and Helena
99935b64ef
Apply suggestions from code review
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Co-authored-by: Helena <hxr@hx42.org >
2022-07-01 12:44:12 +02:00
M Bernt and Marius van den Beek
d4473a9939
Update doc/source/admin/production.md
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Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com >
2022-07-01 11:38:00 +02:00
Matthias Bernt
84f2c122ab
add documentation how to avoid data modification by tools
2022-07-01 11:29:26 +02:00
Nicola Soranzo
533a33f935
Merge branch 'release_22.01' into release_22.05
2022-06-27 10:54:51 +01:00
Helena Rasche
6b9658e0e3
Replace mp4s with youtube links
2022-06-27 10:47:45 +02:00
Nate Coraor
270790edc7
Correct standalone pool names
2022-06-15 11:47:51 -04:00
Marius van den Beek
3a18da8523
Merge pull request #14040 from nsoranzo/modernise_package_build
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Modernise build of packages
2022-06-15 10:48:23 +02:00
Nicola Soranzo
9528dc634d
Replace deprecated distutils.version with packaging.version
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Fix https://github.com/galaxyproject/galaxy/issues/12654 .
2022-06-13 18:47:49 +01:00
Dannon Baker
adb02555cb
Fix proxy_port arg for interactivetools config sample/doc
2022-06-07 10:40:09 -04:00
Dannon
4644922783
Merge pull request #13655 from mvdbeek/metadata_embed
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Create data_fetch and set_metadata celery tasks
2022-06-07 10:27:06 -04:00
Nicola Soranzo
ed9b009ea7
Merge pull request #14013 from qiagu/doc
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Fix a small error in job doc
2022-06-04 03:05:48 +02:00
Qiang Gu and Nicola Soranzo
bb72b21ae4
Update doc/source/admin/jobs.md
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2022-06-03 17:29:12 -07:00
Qiang Gu and Nicola Soranzo
e701a7055d
Update doc/source/admin/jobs.md
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2022-06-03 17:28:57 -07:00
qiagu
fa5eee19d7
Fix job doc
2022-06-03 13:08:44 -07:00
Marius van den Beek
61db34aebe
Merge pull request #13177 from bernt-matthias/topic/auth-maxretries
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make maximum number of retries for username validation configurable
2022-05-27 15:58:07 +02:00
mvdbeek
33a3a203f4
Decrease monitor sleep in tests
2022-05-26 12:48:43 +02:00
mvdbeek
d845f2a880
Update config file description
2022-05-25 19:46:05 +02:00
Marius van den Beek
7cb3f76c6e
Merge pull request #12232 from bernt-matthias/topic/drilldown
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fix `drill_down` parameters
2022-05-25 15:52:50 +02:00
Marius van den Beek
ac510bc8dc
Merge pull request #7894 from bernt-matthias/topic/count-pairs-correctly
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Fix docs for `expect_num_outputs` and add `count` attribute for test `output` and `element` tags
2022-05-25 15:23:10 +02:00
M Bernt
d3da6b94f7
Merge branch 'dev' into topic/auth-maxretries
2022-05-21 17:32:31 +02:00
Nicola Soranzo
4bc75e4179
Replace committer name and GitHub username
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Follow up on commit 559b0d1245
2022-05-12 16:38:12 +01:00
Dannon
71ec553098
Merge pull request #13829 from ahmedhamidawan/Custos_login_enh
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Custos Login Ambiguity enhancement
2022-05-09 06:23:38 -07:00
Sergey Golitsynskiy
559b0d1245
Update committer login name
2022-05-06 18:58:56 -04:00
Nicola Soranzo
765b175eb5
Merge pull request #13819 from dannon/name-change-procedure-update
2022-05-06 18:43:55 +01:00
Nicola Soranzo
5dcafe752b
Update Celery and Kombu links
2022-05-06 13:29:14 +01:00
Dannon
107fca00c4
Merge pull request #13791 from jdavcs/dev_docs_namechange
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[PROCEDURES] Update committers list
2022-05-02 08:53:19 -07:00
Dannon Baker
754da9d701
Example custos-specific login onfig value serialized through to client
2022-04-29 15:59:42 -04:00
Dannon Baker
0e3f437cae
Fix up configuration for STS. Can't rebuild config without this.
2022-04-29 15:31:30 -04:00
Dannon Baker
1b3c20aee3
Add allowance for members changing their own name that doesn't require the whole procedures procedure
2022-04-27 14:56:28 -04:00
Nicola Soranzo
6da2f0e98c
Merge branch 'release_22.01' into dev
2022-04-22 18:23:33 +01:00
Sergey Golitsynskiy
859df043fb
Update committers list
2022-04-22 10:24:02 -04:00
M Bernt
228d07a9cc
Merge branch 'dev' into topic/count-pairs-correctly
2022-04-21 13:03:59 +02:00
mvdbeek
da61e77068
Fix persistent mulled cache unused for repo_has_name
2022-04-14 12:10:42 +02:00
Dannon Baker
ec8bd0e9b2
Rename option to 'use_legacy_history'; invert assertions.
2022-04-13 13:28:41 -04:00
Dannon Baker
10e5fcc7a7
Swap new history to default, leave fallback option.
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Add beta history toggle to config
Add flag for defaulting beta history
Instance default history config
Minor refactoring, use a const for key
Swap site default to *not* use the beta history (yet)
Prettier...
2022-04-12 22:04:54 -04:00
mvdbeek
6f3bdd39d9
Merge branch 'release_22.01' into dev
2022-04-08 10:13:24 +02:00
John Chilton
8cf850b7fc
Merge pull request #13682 from mvdbeek/doc_fixes_tusd
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Fix apache upload config, update gunicorn_extra_args
2022-04-07 08:50:03 -04:00
Nicola Soranzo
4a8b4d01fe
Re-add `announce_start` label to 22.01 release notes
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Removed by mistake in commit 4ecd09e427https://docs.galaxyproject.org/en/master/releases/22.01_announce.html#release-notes
2022-04-07 00:34:20 +01:00
mvdbeek
e08d0c2c99
Fix gunicorn_extra_args, this is just extra_args nows
2022-04-06 20:37:17 +02:00
mvdbeek
9abb53a2c8
Fix apache config for uploads
2022-04-06 20:37:15 +02:00
Nicola Soranzo