Aysam Guerler
5d29c29cad
Charts: Update query limits
2014-10-29 13:37:33 -04:00
Aysam Guerler
916c7b4cc1
ToolForm: Fix citations
2014-10-29 11:37:04 -04:00
Jeremy Goecks
e7d1acd6d3
Trackster: improve display of allele summaries.
2014-10-24 16:29:53 -04:00
Jeremy Goecks
bda44d0daf
Trackster: add generic functions to convert from chromosome position to drawing position. Use functions in variant painter.
2014-10-24 15:43:34 -04:00
Jeremy Goecks
d1eabea652
Trackster: better drawing of deletions in variant tracks. Initial parsing of insertions.
2014-10-24 15:04:06 -04:00
Aysam Guerler
34b5ad3a83
ToolForm: Pack scripts
2014-10-23 09:54:05 -04:00
Aysam Guerler
6e3c1a9549
ToolForm: Add support for dynamic parameters, add tool version check
2014-10-23 09:50:31 -04:00
Martin Cech
190c0fb7f3
data libs: hide share button, render first page by default, fix admin imports from import_dir, fix height of folder item row changing on hover
2014-10-22 13:39:39 -04:00
John Chilton
050699342d
Merged in jmchilton/galaxy-central-ie (pull request #533 )
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Interactive Environments Plugin Framework with IPython Plugin
2014-10-20 17:22:27 -04:00
Carl Eberhard
714d1f0e46
Fix to 875056d: correct selector bleed in subtitle
2014-10-20 10:48:45 -04:00
John Chilton
5547bb7df5
Refactor interactive environment plugin framework out of IPython and into Galaxy.
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Rely on more Python and less on mako, setup a small shared common mako file in config/plugins/interactive_environments/common/ie.mako. Move ie.js into client/galaxy/scripts/galaxy.interactive_environments.js and extract IPython's require config out so it doesn't have to directly reference client/galaxy/scripts/galaxy.interactive_environments.js (I doubt it is where that file actually should be).
2014-10-18 18:38:04 -04:00
Aysam Guerler
643d270c09
ToolForm: Improve validation
2014-10-17 14:11:25 -04:00
Aysam Guerler
2e68411c31
ToolForm: Fix collection selection
2014-10-17 13:52:21 -04:00
Aysam Guerler
6903b915f2
ToolForm: Improve dataset filtering
2014-10-17 13:32:24 -04:00
Carl Eberhard
d8ed0fadfe
History panel: fix 'load you own data' link to Galaxy.upload
2014-10-17 12:37:45 -04:00
Aysam Guerler
37bafad603
Upload: Handle ftp api errors on client side
2014-10-16 19:59:08 -04:00
Jeremy Goecks
d7552ee11d
Fix Circster background bug in Firefox by correctly specifying colors.
2014-10-16 14:15:50 -04:00
Aysam Guerler
6c2657af04
ToolForm: Move dictionary building methods from mako to api.
2014-10-16 12:43:39 -04:00
Aysam Guerler
23c24e1806
ToolForm: Fix options menu
2014-10-16 10:48:18 -04:00
Aysam Guerler
ddc4903bde
ToolForm: Fix sorting of content labels
2014-10-15 18:38:07 -04:00
Aysam Guerler
f88b207e4f
ToolForm: Highlight first error only
2014-10-15 16:43:42 -04:00
Carl Eberhard
8abf2a9579
History structure: found a way to sync SVG and DOM when expanding/collapsing jobs and datasets in the vertical layout
2014-10-15 16:21:51 -04:00
Aysam Guerler
d56b8c6f62
ToolForm: Activate rerun feature for new tool form, fix sliders, fix content labels
2014-10-15 16:06:03 -04:00
Carl Eberhard
68feb04203
Fix to 8f8341a
2014-10-15 14:12:14 -04:00
Carl Eberhard
c9df36071c
History structure: documentation and clean up
2014-10-15 14:05:18 -04:00
Carl Eberhard
936c0a2f76
History structure: (<root>/history/structure) horizontal layout of job/history DAG separated into components (a work in progress) and associated qunit tests; Job model and list-item; rudimentary js graph library and tests; Qunit: allow import of test-data; minor fixes
2014-10-15 13:11:30 -04:00
Aysam Guerler
dfe698a2d4
ToolForm: Parses dynamic options and rerun states to tool model
2014-10-14 17:57:01 -04:00
Martin Cech
9be88675ea
added tooltip for changing the number of items per page link
2014-10-10 16:38:06 -04:00
Martin Cech
2dc49ca624
first version of data libraries pagination, including some bugfixes and docs
2014-10-10 16:33:51 -04:00
Aysam Guerler
986c622780
ToolForm: Fix link shown for tool sharing
2014-10-10 00:11:21 -04:00
Aysam Guerler
3f32590d20
ToolForm: Fix optional label, add file
2014-10-10 00:03:59 -04:00
Aysam Guerler
b29ad30c78
ToolForm: Fix optional parameters
2014-10-09 23:48:59 -04:00
Aysam Guerler
c627034b3a
ToolForm: Fix compatibility check
2014-10-09 12:50:35 -04:00
Aysam Guerler
e5cde87546
ToolForm: Highlight first error only
2014-10-08 23:01:37 -04:00
Aysam Guerler
2ea3fa14af
ToolForm: Fix execute button style
2014-10-08 22:49:39 -04:00
Aysam Guerler
417ce5d7c4
ToolForm: Replace error modal
2014-10-08 22:38:36 -04:00
Aysam Guerler
e608d7c4ff
ToolForm: Add close button to modal
2014-10-08 22:31:32 -04:00
Aysam Guerler
4861b0fa1e
ToolForm: Fix empty collection
2014-10-08 16:31:22 -04:00
Aysam Guerler
9f1a2d9e9f
ToolForm: Improve collection handling
2014-10-08 14:32:48 -04:00
Aysam Guerler
86b8b69eb1
ToolForm: Fix automated form switching
2014-10-07 14:39:33 -04:00
Aysam Guerler
33f1af247c
ToolForm: Add download button, prepare for activation
2014-10-07 13:52:53 -04:00
Aysam Guerler
0c7e1c6c28
Upload: Enable click on filename for ftp files, ToolForm: Fixes and adjustments
2014-10-03 15:31:27 -04:00
John Chilton
a5ccac592b
Attempted merge of next-stable into default.
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Looks correct to me - but let me know if I broke something.
2014-10-02 22:03:39 -04:00
Aysam Guerler
69ad9f050a
ToolForm: Load history summary and metadata separately, add file extension to history api, fix spinner style for select field
2014-10-01 13:36:46 -04:00
Aysam Guerler
49596763c6
ToolPanel: Fix tool description
2014-09-30 17:09:01 -04:00
Aysam Guerler
cdf368931d
Ui/ToolForm: Enable caching of GET requests.
2014-09-30 16:21:17 -04:00
Jeremy Goecks
c11e61acbd
Trackster: make comparisons explicit when testing for track statistical data.
2014-09-30 13:20:52 -04:00
Jeremy Goecks
3258a3359f
Enable Trackster visualizations to be added to Scratchbook via dynamic loading rather than iframes.
2014-09-29 17:12:03 -04:00
Carl Eberhard
a20a83eac4
History panel (editable and current): show contents count and links to toggle show deleted/hidden in subtitle; minor style fixes
2014-09-29 14:45:29 -04:00
Aysam Guerler
1193fb177a
Upload: Minor fix, wait for history in show function
2014-09-29 14:24:21 -04:00
Aysam Guerler