John Chilton
5661e0db9f
Exploratory Jupyter environment for `galaxy-selenium`.
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The new Makefile-based command ``make serve-selenium-notebooks`` will serve notebooks in lib/galaxy_test/selenium/jupyter.
The notebooks will target a Galaxy host running on port 8080 - but are parameterized to be run with papermill (https://papermill.readthedocs.io/ ) for automate targeting different Galaxy servers, remote Selenium servers, etc..
Screenshots will be embedded right into the notebook.
Example notebooks setup to target just the library code in ``galaxy-selenium`` as well as one appropriate to leverage the Galaxy testing framework are included and documented in depth via modules docstring for ``galaxy_test.selenium.jupyter``.
2021-01-18 17:24:28 -05:00
John Chilton and Nicola Soranzo
400da5d677
Apply suggestions from code review
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-01-13 18:19:29 -05:00
John Chilton
21f06bafef
API design guidelines.
2021-01-13 18:18:39 -05:00
Nicola Soranzo
e225de9b00
Merge pull request #11103 from jmchilton/more_docs_stuff_3
2021-01-12 17:58:24 +00:00
Sergey Golitsynskiy and Nicola Soranzo
64139e9bb3
Update doc/source/dev/writing_tests.md
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-01-12 10:04:27 -05:00
Sergey Golitsynskiy and Nicola Soranzo
f9b38719fd
Update doc/source/dev/writing_tests.md
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-01-12 10:03:41 -05:00
John Chilton
b8c11ab21a
Link in MQ docs stub.
2021-01-12 09:34:28 -05:00
John Chilton
955c6a8053
Index the user release notes when available by default.
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https://github.com/galaxyproject/galaxy/pull/11103#discussion_r555514754
2021-01-12 09:34:28 -05:00
John Chilton
99186b6294
Remove sphinx stub generated due to local, non-branch changes.
2021-01-12 09:34:28 -05:00
John Chilton
ee3280ad52
Mark pre-annoucnement page as orphan.
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I guess I always imagined we would link these but then I was told we shouldn't - so I don't even know why we're generating them to be honest then.
2021-01-12 09:29:55 -05:00
John Chilton
8d06cffae4
Remove now unused .gitignore file.
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Or am I missing how that file is generated in someway...
2021-01-12 09:29:54 -05:00
John Chilton
eef17877d1
Link to user announcements to eliminate sphinx warnings.
2021-01-12 09:29:54 -05:00
John Chilton
6c79073eb4
Mark some Sphinx as orphans - they seem to be not linked to TOC for reasons.
2021-01-12 09:29:54 -05:00
John Chilton
e643c09806
Fixup more sphinx warning in config option doc generation.
2021-01-12 09:29:53 -05:00
John Chilton
f5648e2025
Fixup some linking between documents in sphinx.
2021-01-12 09:29:53 -05:00
John Chilton
9bd66edc0b
Re-do API documentation to avoid duplicate labels.
2021-01-12 09:29:53 -05:00
John Chilton
61188ca27b
Hook requests up to intersphinx.
2021-01-12 09:29:53 -05:00
John Chilton
386470789f
A couple new ways to speed up doc building locally.
2021-01-12 09:29:53 -05:00
Sergey Golitsynskiy and Nicola Soranzo
0b0ec0cada
Update doc/source/dev/writing_tests.md
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2021-01-12 00:37:06 -05:00
Sergey Golitsynskiy
204538c387
Add more edits
2021-01-12 00:35:45 -05:00
Sergey Golitsynskiy
dad51dee87
Make minor improvements, add ToC
2021-01-11 23:28:15 -05:00
Nicola Soranzo
ed084a77c3
Add framework tests to Overview
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Also fix some typos.
2021-01-11 19:07:39 +00:00
Nicola Soranzo
8b67c2cc05
Remove broken link
2021-01-11 18:48:42 +00:00
Nicola Soranzo
57305c2184
Fix Sphinx warnings
2021-01-11 18:48:10 +00:00
John Chilton
e1d0a1d049
Rebuild rst lib structure.
2021-01-11 13:03:57 -05:00
John Chilton
6fd6100285
Various sphinx warning fixes.
2021-01-11 12:58:45 -05:00
Marius van den Beek
75ae4264dc
Merge pull request #11088 from jmchilton/test_docs_1
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Documentation for Writing Tests
2021-01-11 09:50:00 +01:00
John Chilton
1a7215b040
Documentation on writing Galaxy tests.
2021-01-10 18:52:26 -05:00
John Chilton
1d63a3abd5
Link to high-quality developer documentation.
2021-01-10 18:52:26 -05:00
John Chilton
02380a88a8
A couple small fixes for docs generation.
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- Don't use 'sphinx.ext.autodoc' if existing option GALAXY_DOCS_SKIP_SOURCE=1 is used to speed up the build.
- Add a matching option to GALAXY_DOCS_SKIP_SOURCE called GALAXY_DOCS_SKIP_RELEASES to further speed up development of just the core rst/md docs.
- Fix an markdown link added to the rst index this release.
2021-01-10 18:52:26 -05:00
John Chilton
0482543402
Merge pull request #10822 from jmchilton/conda_readonly_2
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Implement read-only conda resolver (alternative)
2021-01-10 12:43:59 -05:00
Marius van den Beek
af4d041dc9
Merge pull request #10592 from hexylena/edam-tool-panel
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EDAM tool panel
2021-01-08 18:56:28 +01:00
John Chilton
22aa23e1db
Implement read-only conda resolver.
2021-01-08 11:09:10 -05:00
Dannon
02f6e028bb
Merge pull request #10960 from astrovsky01/new_version_tab
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Add version tab which links to release notes to help tab
2021-01-08 11:08:38 -05:00
Dannon
c0b45fde61
Merge pull request #10701 from linnil1/fix-ftp-doc
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Update ftp document for rounds=100000
2021-01-07 19:20:12 -05:00
Helena Rasche
f5a3545541
Merge branch 'dev' into edam-tool-panel
2021-01-07 19:54:12 +01:00
Marius van den Beek
6bed4e8d4d
Merge pull request #10573 from brinkmanlab/doc_data_manager
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Document data manager repository layout
2021-01-07 19:12:13 +01:00
John Chilton
b7cb74c600
Merge pull request #11067 from nsoranzo/clarify_master_api_key
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Clarify `master_api_key` intended use
2021-01-06 22:21:50 -05:00
Marius van den Beek
683bb54183
Merge pull request #10347 from brinkmanlab/mq_doc
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Stub MQ docs
2021-01-06 22:12:22 +01:00
Nicola Soranzo
967ad305dc
Clarify master_api_key intended use
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xref. https://github.com/galaxyproject/galaxy/issues/11065
2021-01-06 20:26:44 +00:00
John Chilton
9b5526a998
Merge pull request #10959 from ic4f/dev_issue10607
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Add custom activation email message
2021-01-04 10:51:27 -05:00
John Chilton
c7d6f286e5
Merge pull request #10919 from mvdbeek/zipstream_replace_tarball
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Replace StreamBall, replace tarballs with zip
2020-12-21 10:27:51 -05:00
Marius van den Beek
1501fa9a65
Merge pull request #10497 from natefoo/gxit-stop
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Support stopping Interactive Tools without deleting their outputs
2020-12-21 10:06:07 +01:00
mvdbeek
64b75e074c
Restore upstream_gzip option, rename upstream_zip to upstream_mod_zip
2020-12-19 19:03:53 +01:00
Alexander OSTROVSKY
b6891f9f99
different return if running a dev instance
2020-12-18 14:21:48 -08:00
Alexander OSTROVSKY
249e8744eb
updated config name
2020-12-18 09:06:16 -08:00
Marius van den Beek and Nicola Soranzo
f3bf548da5
Improve mod-zip documentation
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2020-12-18 17:04:00 +01:00
mvdbeek
ad655b9e52
Fix grammar and clarify internal statement
2020-12-18 16:45:37 +01:00
mvdbeek
d4552d31cb
Enable archive creating via mod-zip
2020-12-18 14:09:31 +01:00
Nicola Soranzo
79210e8ed7
Update application documentation
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with:
```
make -C doc/ updaterst
```
2020-12-18 02:37:10 +00:00
John Chilton