carlfeberhard
c1ce8ef0ce
UI, list of pairs collection creator: improve auto-pair error message to be more beginner friendly(?)
2015-12-14 09:20:10 -05:00
carlfeberhard
f14b38124b
UI, list of pairs collection creator: prevent vice-versa pair duplication by removing paired dataset from both temp lists during auto pairing
2015-12-14 08:59:24 -05:00
John Chilton
8af5671953
Allow input collections to specify mutiple collection types.
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Parallelling format specifier which can take multiple formats.
2015-12-13 13:38:50 +00:00
carlfeberhard
84f3b72e1a
(merge dev); Testing, histories: update tests to reflect allowing anon to create/copy histories via the API
2015-12-11 13:44:48 -05:00
carlfeberhard
32be886f0f
API, Histories: allow api/histories/create to be used as anon user; UI, Histories: minor fixes
2015-12-11 10:30:39 -05:00
carlfeberhard
9e512f5246
UI, History: use copy dialog in the embedded histories in Pages, add autoClose option to copy dialog
2015-12-11 08:44:45 -05:00
guerler
952f3f9b7a
Open select2 dropdown on click
2015-12-11 03:10:17 -05:00
carlfeberhard
d72b913c1d
UI, History: hack multiple copy by API into the 'histories shared with me' mako grid
2015-12-10 16:25:52 -05:00
carlfeberhard
1ebc0ea9e7
UI, Quotameter: correctly update the quotameter for anon users
2015-12-10 14:15:33 -05:00
carlfeberhard
cb23e010d7
UI, History: use copy dialog in history/view for import, minor fixes
2015-12-10 13:52:43 -05:00
guerler
9a4c834370
Use fa icons for drill down expansion
2015-12-10 13:01:35 -05:00
carlfeberhard
09cb673a9b
UI, History: use copy dialog for shared history popupmenus, use custom templates for both saved and shared history lists/grids. refactor custom grid code for insertion of copy dialog
2015-12-10 12:59:19 -05:00
guerler
636e9900ba
Improve handling of unspecified workflow editor values
2015-12-10 10:57:29 -05:00
carlfeberhard
253ca7ec49
UI, History: insert/use copy dialog in the 'Saved Histories' grid
2015-12-10 10:52:48 -05:00
carlfeberhard
941109dda8
UI, History: use copy dialog as import dialog in published history pages, refactor copy-dialog
2015-12-09 19:29:59 -05:00
carlfeberhard
d72dd3735c
Client, polyfills: check for sessionStorage using a more cross-browser (apparently) way
2015-12-09 14:10:36 -05:00
carlfeberhard
e391fa4975
UI, History: allow copy dialog to have default of copy-all-datasets passed in as option; Replace import link with copy dialog in published histories
2015-12-09 11:44:51 -05:00
carlfeberhard
78427438ad
UI, History: refactor the history copy dialog, use it from the options menu (instead of history/copy), pass ui-modal closing_callback a flag whether it was a cancellation or not
2015-12-09 11:07:07 -05:00
guerler
2b63427e96
Handle late validated dataset references
2015-12-08 16:39:21 -05:00
Martin Cech
fe1c9dd293
Merge pull request #1251 from jmchilton/workflow_labels_2
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Workflow Editor UI for Step Labels
2015-12-08 12:04:26 -05:00
carlfeberhard
6ba86d89bc
UI, Citations: don't create new BibtexParser, remove debugging
2015-12-08 10:57:41 -05:00
carlfeberhard
5ff09896f7
UI, Citations: fix require of bibtex parser
2015-12-08 10:27:09 -05:00
John Chilton
3f8950628c
Workflow label UI refinement.
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- Escape workflow labels in mako.
- Handle unlabelling steps properly (restore original node name to node and editor form titles).
2015-12-08 09:22:11 +00:00
guerler
485e8ef8f2
Add fallback for missing section and repeat title
2015-12-07 16:06:37 -05:00
carlfeberhard
41a56ead74
Fix list collection creator being cutoff by restoring height: 100%
2015-12-07 15:55:17 -05:00
Martin Cech
ef0b6cc459
show notifications as Toasts and not like JS alerts (bleh)
2015-12-07 15:07:14 -05:00
guerler
8c6d530a66
Merge branch 'dev' of git://github.com/galaxyproject/galaxy into run_workflow_form_004
2015-12-07 00:50:30 -05:00
John Chilton
3a023f4cae
Merge pull request #818 from mvdbeek/cross_toolshed_tool_fetching
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Look up installed tools from different toolshed(s)
2015-12-06 15:56:31 -05:00
guerler
a951d34c70
Merge branch 'dev' of git://github.com/galaxyproject/galaxy into run_workflow_form_004
2015-12-06 14:09:20 -05:00
carlfeberhard
b55635f71b
Client, upload: fix passing of nginx_upload_path and ftp_upload_site to upload-view, fix default nginx_upload_path in configuration serializer
2015-12-06 12:10:31 -05:00
guerler
ab651fa89c
Fix url, lint and packing
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Catch missing history, fix failing api test
2015-12-06 10:48:40 -05:00
John Chilton
e3161b4671
Add support for workflow step labels in editor.
...
- If a step has a label, display it in the step editor side panel title.
- Allow clicking the title to change the label.
- Display the label (if set) as the workflow node box title.
- Add icon to workflow node since the title might not be related to type anymore.
- Enforce unique labels accross the workflow in the editor.
- Qunit test cases for some of this behavior and other recent changes.
2015-12-06 12:27:13 +00:00
guerler
6820b29d3b
Merge branch 'dev' of git://github.com/galaxyproject/galaxy into run_workflow_form_004
2015-12-05 22:42:31 -05:00
guerler
e29f7155c4
Remove files
2015-12-05 22:40:54 -05:00
guerler
7e5069baff
Remove files
2015-12-05 18:34:13 -05:00
guerler
4dc134d43b
Merge branch 'dev' of git://github.com/galaxyproject/galaxy into run_workflow_form_004
2015-12-05 18:29:18 -05:00
Björn Grüning
6126bd0e93
Merge pull request #1214 from jmchilton/format_2_1
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Small enhancements in workflow inputs and outputs
2015-12-05 21:37:50 +01:00
John Chilton
1fdde2cb4d
Refactor generic side workflow editor panel toward backbone.
2015-12-05 16:37:08 +00:00
Marius van den Beek
4f1359a0a6
Merge branch 'dev' of github.com:galaxyproject/galaxy into cross_toolshed_tool_fetching
2015-12-05 12:34:37 +01:00
Marius van den Beek
1be4f85404
Add messages inform users of changes in the tool_id.
2015-12-05 12:28:46 +01:00
John Chilton
c91a2eb339
Multi data parameter improvements.
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Allow multiple collections to be fed to a multi data parameter in one reduction step. Fixes #750 and will really simplify certain classes of tools.
Rebased original with fixes for rerun of such reductions.
Manually tested workflow execution and everything seems fine. The workflow editor already thought this was possible, so that is another bug corrected by this enhancement.
To run the associated API test, execute the following command:
./run_tests.sh -with_framework_test_tools -api test/api/test_tools.py:ToolsTestCase.test_reduce_multiple_lists_on_multi_data
Conflicts:
static/maps/mvc/dataset/dataset-choice.js.map
static/maps/mvc/form/form-select-content.js.map
static/scripts/mvc/form/form-select-content.js
2015-12-04 20:41:21 +00:00
John Chilton
cee9d4d1b3
Grunt the workflow JS.
2015-12-04 20:37:35 +00:00
carlfeberhard
9e8068f367
(merge dev)
2015-12-04 13:17:29 -05:00
Eric Rasche
198cb7c9a1
Fix rebase issue
2015-12-04 11:51:17 -06:00
Eric Rasche
9bd2712c5d
Just going to clobber everything
2015-12-04 11:46:27 -06:00
Eric Rasche
564f12c50f
Remove icons
2015-12-04 11:46:00 -06:00
Eric Rasche
1cc57b1eb2
Add icons and reorganise history menu
2015-12-04 11:46:00 -06:00
guerler
ac79cf191c
Fix style naming
2015-12-03 22:09:58 -05:00
guerler
a8a4480d5c
Fix dataset matching
2015-12-03 22:03:09 -05:00
carlfeberhard
b72035c9fc
Webpack: fix/re-work the pub-sub connection between the quotameter and the history panel so that the meter updates properly when a new dataset is added
2015-12-03 16:01:18 -05:00
carlfeberhard