guerler
ea10fbe89b
Make colors optional in nvd3 visualizations
2021-08-02 10:38:42 -04:00
Nicola Soranzo
9c08ecc258
Replace fa-refresh icon with fa-redo for job re-run buttons
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to distinguish it from the sync button we use e.g. to refresh the history.
2021-06-15 23:23:01 +01:00
Nate Coraor
2ddc310711
Update dependency resolver docs and drop sample XML file in favor of
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direct configuration under the dependency_resolvers key of galaxy.yml.
2021-06-07 18:16:07 -04:00
mvdbeek
3d59717142
Add celery setup that regularly cleans audit_table
2021-05-11 18:34:30 +02:00
almahmoud
ed362c48b9
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into alex_branch
2021-05-05 12:47:09 -04:00
almahmoud
63510bea23
Container monitor in destination
2021-05-04 17:09:23 -04:00
mvdbeek
2b9a6a96a4
Merge branch 'release_21.01' into dev
2021-04-27 16:13:10 +02:00
Helena Rasche
19d3119428
Patch to click the button which should be more stable
2021-04-14 17:08:05 +02:00
mvdbeek
90ebe45802
Let factory figure out where the galaxy config file lives
2021-04-02 18:47:41 +02:00
mvdbeek
cbee46007b
Add fallback for pure python worker
2021-04-02 18:47:41 +02:00
mvdbeek
7b5e09ec08
Set worker timeout to 300 seconds
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If this is too short gunicorn will restart the worker before they
finish booting.
2021-04-02 18:44:15 +02:00
Dannon Baker
3967906260
Incremental config changes; this makes schema loader resolve correctly
2021-03-29 09:29:24 -04:00
Dannon Baker
8702980d40
Swap to gunicorn w/ uvicorn worker
2021-03-29 09:29:24 -04:00
Dannon Baker
1174dac296
Move recalculate task over. Debug mode for celery, refactor a bit (still no bueno, just trying to get end-end complete)
2021-03-29 09:29:24 -04:00
Dannon Baker
1c6198c42d
Split celery worker and tasks up
2021-03-29 09:29:24 -04:00
Dannon Baker
f11bacf9d3
Starts a celery worker (that does nothing yet, but it does connect to my local redis)
2021-03-29 09:29:24 -04:00
Dannon Baker
2ce193821a
Basic dev reloading w/ circus
2021-03-29 09:29:24 -04:00
Anthony Bretaudeau
fea905a2b5
add symlink
2021-03-09 17:31:31 +01:00
Bjoern Gruening
bfbb332fc7
cleanup the supported filestypes for Nora
2021-03-05 14:47:31 -05:00
Bjoern Gruening
853fc31253
cleanup the supported filestypes for Nora
2021-03-05 09:48:30 +01:00
Nate Coraor
a2d1625780
Merge remote-tracking branch 'upstream/release_21.01' into dev
2021-03-01 16:52:02 -05:00
Dannon Baker
43e5ee0e64
Nora visualization version bump incorporating a few upstream bugfixes
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(protocol fix supporting https, which was noticed on on usegalaxy.org,
more)
2021-02-24 22:45:08 -05:00
Nicola Soranzo
7dbdce3be2
Merge branch 'release_21.01' into dev
2021-02-19 18:03:30 +00:00
Helena
4cfcfef900
Merge branch 'release_21.01' into gig-tracking
2021-02-16 16:17:17 +01:00
Helena Rasche
3906430986
Add tracking code to webhook for GTN stats
2021-02-16 15:37:44 +01:00
mvdbeek
dd7aa6ec38
Merge branch 'release_21.01' into dev
2021-02-08 16:01:53 +01:00
Dannon Baker
26b95976ab
Merge remote-tracking branch 'upstream/release_20.09' into release_21.01
2021-02-08 09:40:08 -05:00
Dannon Baker
25d9f03cec
minor cleanup when testing
2021-02-08 09:24:29 -05:00
Helena Rasche
b6e2299c93
Persist scroll/url information, in both chrome & firefox
2021-02-04 17:49:51 +01:00
Nicola Soranzo
d26b3d9848
Fix all E203, E741 and W504 flake8 errors
2021-01-18 10:35:41 +00:00
Nicola Soranzo
452aba9ee3
Fix remaining issues reported by bugbear; add it to flake8 reqs
2021-01-16 05:58:15 +00:00
Sergey Golitsynskiy
882ad635d8
Merge pull request #11089 from ic4f/dev_fastapi_tours
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Add FastAPI routes for tours
2021-01-12 22:08:47 -05:00
Dannon Baker
a93ee16dc8
Fix entrypoint
2021-01-12 08:49:17 -05:00
Dannon Baker
afc87f99e4
Test deploy w/ prebuilt files
2021-01-12 08:48:21 -05:00
Sergey Golitsynskiy
ba1b26efb6
Remove id field from tour yaml files
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Field not used. See code review discussion here:
https://github.com/galaxyproject/galaxy/pull/11089#discussion_r555072412
2021-01-11 13:43:14 -05:00
Sergey Golitsynskiy
a96570eab6
Add missing id keys to built-in tours
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Pydantic models (currently added to tours) require explicit
specification of model fields. Having an "id" field as required seems
right from a design standpoint.
However, if there is a reason for an "id" value to be included in the
galaxy_ui tour but not in the other tours, this field can be made
optional: `id: Optional[str] = None`
2021-01-10 18:05:06 -05:00
Bjoern Gruening
8afa197856
new config
2021-01-10 08:00:57 -05:00
Bjoern Gruening
d7ba38915f
Add the 3D Visualisation from Nora
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add nora
change nora plugin
(rebased to drop artifacts)
2021-01-10 08:00:29 -05:00
Marius van den Beek
8c79b7ddcf
Merge pull request #8596 from blankenberg/to-the-right
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Allow InteractiveTools to use path-based proxying when requires_domain=False
2021-01-07 19:41:20 +01:00
Daniel Blankenberg
f88d6cc50a
Allow InteractiveTools to use path-based proxying when requires_domain=False
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To the right, to the right, to the right, to the right
2021-01-07 16:47:56 +01:00
greg
8e41f40041
Change code per review
2020-12-31 07:56:57 -05:00
greg
72747da5be
Expand image formats for viewing in OpenSeadragon
2020-12-30 15:10:56 -05:00
Dannon
18f519c029
Merge pull request #10756 from gregvonkuster/osdragon
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Add the OpenSeadragon viewer for deep zoom images
2020-12-02 11:31:36 -05:00
Dannon Baker
f744bfa3ab
Tweak OSD plugin build, include images.
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No need to bundle this since it's prebuilt -- this simply copies it
(including images and maps which were left out before) for staging,
which is faster and more complete.
2020-12-02 09:58:55 -05:00
greg
7649b73afd
Attempt to use the newer viz packaging approach
2020-12-02 09:58:53 -05:00
greg
680357ef5f
Add the OpenSeadragon viewer for deep zoom images
2020-12-02 09:57:56 -05:00
Nicola Soranzo
5d216f9ec8
Move new config files samples to lib/galaxy/config/sample/
2020-12-02 04:08:52 +00:00
Björn Grüning
4836f19004
Merge pull request #10404 from guerler/add_vis_options
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Adds Visualization options to Markdown Editor
2020-12-01 22:46:58 +01:00
guerler
52bc2b92c1
Allow videos and audio to be embedded into reports
2020-11-30 18:54:01 +01:00
mvdbeek
eaa64b95c9
Merge branch 'release_20.09' into dev
2020-11-24 10:07:19 +01:00
guerler