Nate Coraor
698d95e52d
Move all galaxy.util.* modules to the galaxy-util package.
2021-04-05 12:06:48 -04:00
Nate Coraor
a857929af5
Move all galaxy.model.* modules to the galaxy-data package.
2021-04-05 11:48:14 -04:00
Nate Coraor
ad9d7e88e6
Include galaxy.model.migrate.versions in galaxy-app package.
2021-04-02 14:16:48 -04:00
Nate Coraor
e7127f7386
Include galaxy.workflow.refactor and galaxy.workflow.reports in
...
galaxy-app package.
2021-04-02 13:51:25 -04:00
Nate Coraor
4ad0b7c10c
Include galaxy.model.tool_shed_install and sub-packages in galaxy-app.
2021-04-02 13:37:46 -04:00
Nate Coraor
c25e730c95
Include galaxy.util.tool_shed in galaxy-app package.
2021-04-02 13:32:39 -04:00
Nate Coraor
61a87d1a36
Include galaxy.config in galaxy-app package.
2021-04-02 13:23:13 -04:00
John Chilton
9862fac8cf
Small improvements to try to get galaxy-app closer to working.
2020-12-29 19:47:46 -05:00
Nicola Soranzo
9d74bba7fb
Drop support for retired Python 3.5
...
Upgrade syntax using `pyupgrade --py36-plus` .
Manually drop several `six` imports.
Also:
- Remove broken pr_cache in scripts/bootstrap_history.py
- Fix broken prefix removal in lib/galaxy/tool_util/deps/mulled/mulled_build.py
2020-10-07 11:52:13 +01:00
John Chilton
0ea20422e0
Modify packages to allow test requirements (for responses).
2020-07-06 18:49:04 -04:00
John Chilton
559b664b07
Refactor tool_shed webapp out of Galaxy.
2019-11-11 12:32:19 -05:00
John Chilton
3278d1df89
Refactor galaxy install migrate into galaxy.
2019-11-11 00:28:25 -05:00
John Chilton
a18c992974
Refactor installed_repository_metadata_manager into galaxy.
2019-11-11 00:27:32 -05:00
John Chilton
44cc9735aa
Refactor tool_shed.metadata.metadata_generator into Galaxy.
2019-11-11 00:27:31 -05:00
John Chilton
898191b591
Refacotr repository_dependency_manager into galaxy.
2019-11-11 00:27:31 -05:00
John Chilton
6cce30fc80
Refactor galaxy_install.datatypes into galaxy.
2019-11-11 00:27:30 -05:00
John Chilton
70b5845505
Refactor galaxy_install.tools into galaxy.
2019-11-11 00:27:30 -05:00
John Chilton
aa8f32a671
Refactor tool_shed.galaxy_install.tool_dependencies into galaxy.
...
TODO:
2019-11-11 00:27:29 -05:00
John Chilton
6fd2fac89c
Rework various tool shed imports head of big refactor.
2019-11-10 22:37:49 -05:00
Martin Cech
e45d7959a7
Merge pull request #8308 from jmchilton/push_scripts_into_subpackages
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Push galaxy-meta scripts into appropiate subpackages.
2019-07-15 18:45:13 -04:00
Sergey Golitsynskiy
2bb7149aac
Move modules to tool_util package
2019-07-12 18:14:51 +01:00
John Chilton
9b287ef06c
Push scripts into subpackages.
2019-07-08 16:38:10 +02:00
John Chilton
59bc1aff2b
Implement outline of galaxy-web-apps packages.
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Bring in more tool shed stuff into app package also.
2019-07-06 14:15:13 +02:00
John Chilton
dee02db3e0
Move more modules into galaxy-app.
2019-07-06 14:15:13 +02:00
Nicola Soranzo
64516cb92f
Remove unnecessary symlinks
2019-07-05 16:34:59 +02:00
John Chilton
b76eb61c81
Bring more directories under packages/ export.
...
Add quota to data/ (should be refactored to not use trans but is straight forward and the imports are fine for now), and add three new packages.
- auth
- authnz
- app
A lot more needs to be added to app but we need to de-tangle the circular imports between app and web stuff and webapp stuff. It is messier than I thought.
2019-06-27 08:43:16 -04:00
Nate Coraor