Martin Cech
8891243e69
data libraries: small API changes; bugfix; deferred queue for adding datasets from history to library; permission handling work
2014-04-18 17:16:58 -04:00
Carl Eberhard
fd5e9d2d2c
QA, metrics-logger: finish tests for existing; casperjs: restore correct return value for loggedInAs
2014-04-18 15:58:29 -04:00
Carl Eberhard
302f2109ed
QA: more testing of metrics logger
2014-04-18 12:58:20 -04:00
Carl Eberhard
a3a02170cb
QA: add qunit tests for galaxy-app-base; Fix defaults in metrics-logger tests
2014-04-18 09:56:31 -04:00
Carl Eberhard
a434c454f5
Client app: allow bootstrapping data as require dependency, use window-scoped 'on ready' fn (for now), mixin Backbone.Events; galaxy.panels.mako: fix app ready v. doc ready order; Fix target fo addLogging; history.mako: simplify
2014-04-18 09:34:16 -04:00
Dave Bouvier
5bdb75aa82
Correct usage of "it's" versus "its".
2014-04-17 15:49:32 -04:00
Daniel Blankenberg
1899f37cd1
Remove 'galaxy' tag as default now that we are using a custom biostar site.
2014-04-17 13:03:02 -04:00
Jeremy Goecks
26051b1957
Trackster: move browser routing into TracksterView so that hash-based location routing works for both private and shared visualizations.
2014-04-17 09:47:41 -04:00
Martin Cech
db752de9d3
data libraries: API improvements; add datasets from history to folder; folder contents sorting; progressive rendering; new error code; new API endpoint; js model comparators; Galaxy.currUser defensive programming;
2014-04-16 16:27:13 -04:00
Carl Eberhard
05d113deb1
Temporary fix to galaxy.panels.mako to ensure AMD order
2014-04-15 15:06:40 -04:00
Carl Eberhard
0c5a417268
UI: add GalaxyApp to base_panels.mako; add requirejs i18n plugin and nls/zh, nls/ja locale files, wire into _l client localizer, remove previous localization cruft; remove reliance on history_panel.mako
2014-04-15 12:31:33 -04:00
Daniel Blankenberg
86f167680c
Update packed scripts
2014-04-15 12:00:02 -04:00
Daniel Blankenberg
0a40fd397a
UI, make HDAs in NEW state have delete, info and rerun buttons, as well as disabled view and edit buttons. Move new state to NOT READY STATES.
2014-04-15 11:59:14 -04:00
Martin Cech
4320c71bd8
data libraries: initial work on importing datasets from histories: fetching history list, fetching and displaying history contents
...
repaired bug in unbinding nested views
2014-04-14 14:09:36 -04:00
Carl Eberhard
6672b8db2c
Metrics: remove double parsing of JSON from server-side, add GalaxyApp object with config and user, tie metrics-logger to GalaxyApp
2014-04-14 13:00:06 -04:00
Martin Cech
01cd002652
data libraries: API improvements, access permissions work, started with UI for adding files from history work
2014-04-11 17:29:36 -04:00
Carl Eberhard
4d3132f02f
merge next-stable
2014-04-11 16:48:28 -04:00
Carl Eberhard
d87eca5b67
Pack data.js from 86f93a1
2014-04-11 16:46:50 -04:00
Carl Eberhard
f47f539d43
pack scripts
2014-04-11 16:41:45 -04:00
Carl Eberhard
cf0e06104a
PR #366 from Jian-Long Huang: to next-stable
2014-04-11 16:22:11 -04:00
Jian-Long Huang
5bb6d9534c
Fix the column alignment in the tabular format data
2014-04-12 03:29:53 +08:00
Carl Eberhard
e68c90329a
QA: allow grunt watch on qunit tests, add stubs for metrics-logger and hda-base
2014-04-11 13:34:06 -04:00
Nicola Soranzo
46641daaa7
Merge galaxy/galaxy-central default branch.
2014-04-11 12:00:39 +02:00
Jeremy Goecks
80b603902a
Merge next-stable branch to default.
2014-04-10 17:21:38 -04:00
Jeremy Goecks
28ddf4bcc2
Updates to Sweepster to get it working again.
2014-04-10 17:21:00 -04:00
Carl Eberhard
8f179efe71
Metrics: initial commit of client side logger
2014-04-10 16:28:16 -04:00
Martin Cech
4bea6249f3
forgotten files for previous commit
...
data libraries: API refactoring and improvements; backbone decoupling; role UI first implementation
2014-04-10 15:07:01 -04:00
Martin Cech
0dd3187401
data libraries: API refactoring and improvements; backbone decoupling; role UI first implementation
2014-04-10 15:05:33 -04:00
John Chilton
86ee4fdabf
Simplify enable_output_terminal and enable_output_terminal in workflow editor.
...
These functions were taking in a single element and then looping through it. I hope this is not some intententional jQuery pattern to change the value of 'this' I don't quite understand and is just a remnant of when some loop over inputs was on the inside of this function or some other such refactoring.
2014-04-10 13:31:48 -05:00
John Chilton
69ddb38557
Refactor interaction between workflows JS and editor JS for adding nodes.
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Add abstraction into editor for use by galaxy.workflow.js to hide some editor details from workflow code and reduce duplication between add_node_for_tool and add_node_for_module.
2014-04-10 13:31:47 -05:00
John Chilton
9b0bbb0dab
Remove unused variable?
2014-04-10 13:31:46 -05:00
Nicola Soranzo
f73d5fba6c
Fix old wiki links.
2014-04-10 20:00:45 +02:00
Carl Eberhard
d7dda26c58
Remove debugging statements
2014-04-08 14:14:17 -04:00
Jeremy Goecks
9d64557de5
Trackster: update jQuery selector so that all tool inputs are updated on change rather only <input> elements. Pack script.
2014-04-08 12:07:50 -04:00
Jeremy Goecks
910fc94c94
Pack script.
2014-04-07 12:22:01 -04:00
Jeremy Goecks
5edebad3e6
Visualization client-side framework: use simpler/faster/boundary-condition insensitive calculation for extracting subsets of reference sequence data.
2014-04-07 12:21:43 -04:00
Jeremy Goecks
086e37c557
Trackster: only draw incomplete features when displaying features, not coverage data. Pack script.
2014-04-04 16:33:06 -04:00
Jeremy Goecks
18c2e3fc71
Trackster: fixes for creating and resizing composite line tracks.
2014-04-03 14:33:48 -04:00
Martin Cech
1758f3d63a
libraries: removed unused and deprecated function
2014-04-02 17:21:06 -04:00
Martin Cech
5f928cd92d
libraries: more refactoring fun; full UI for permissions handling; repainting from cache
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should be ready for stable
2014-04-02 17:18:51 -04:00
Martin Cech
8d2a8f9b7b
libraries: more refactoring; basic UI based on role handling; attaching to global Galaxy object; persistent lib preferences
2014-04-02 11:07:04 -04:00
Jeremy Goecks
579ebf5157
Circster fixes: (a) make compatible with new config object; (b) fix formatting issue with negative values; and (c) clean up debugging statements. Pack scripts.
2014-04-02 10:15:54 -04:00
Jeremy Goecks
fee4cb7333
Trackster: CompositeTrack fixes for recent refactoring. Pack script.
2014-04-02 09:12:07 -04:00
Jeremy Goecks
573456d475
Trackster: show drawn reads across all tiles by pooling incompletely drawn reads and drawing them at the end.
2014-04-01 16:21:32 -04:00
Jeremy Goecks
e2f56b50f2
Trackster: drawing performance improvement. Packed scripts.
2014-04-01 15:09:30 -04:00
Jeremy Goecks
75d9496e10
Genome data providers: (a) organize imports and (b) implement random and nth read iterators to downsample deep coverage regions. Use nth read iterator by default because it is the fastest.
2014-04-01 10:30:12 -04:00
Martin Cech
a1e9cf6f07
data libraries, don't allow showing deleted libraries to non-admins; provide information what actions user is allowed to do on library;
2014-03-31 15:36:49 -04:00
Martin Cech
14760aba92
added is_admin to the javascript user object for UI rendering purposes;
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modified is_admin_user in masthead config to be consistent with standard is_admin check
2014-03-31 12:55:06 -04:00
Carl Eberhard
b1b00a9562
Fix base-mvc SessionStorageModel to require an id; Show alert on disabled sessionStorage
2014-03-31 12:08:21 -04:00
Carl Eberhard
2bb923e892
Fix to add spacing in hda-edit deleted/hidden info boxes between added sentences
2014-03-31 11:21:14 -04:00
Martin Cech