Commit Graph
831 Commits
Author SHA1 Message Date
Martin Cech bba6048af9 data libraries: when importing into history set it as current and provide link to the 'Analyze page' so users can switch quickly 2014-05-05 13:51:13 -04:00
Carl Eberhard d769895cc2 aad9eb1a8486: remove debugging statement 2014-05-05 13:36:51 -04:00
Carl Eberhard 3538c70bfc Fixes: correct docs in histories/set_as_current to PUT; use correct empty msg when removing the last hda view in a history; remove dependency on utils.js from ui-modal.js 2014-05-05 13:34:07 -04:00
Martin Cech fe79378599 data libraries: router improvements, detecting whether the loaded page is the first page of the app (user came from outside) or within and navigating accordingly 2014-05-05 13:03:16 -04:00
Martin Cech 033e67698b data libraries: first take on shareable url for datasets 2014-05-02 18:00:23 -04:00
Carl Eberhard 6fbd061961 History: cruft removal from controller and associated javascript 2014-05-02 15:45:25 -04:00
Martin Cech a1f6d2042e data libraries: bugfix, better UI changes role handling (stilll not _good_ but better) 2014-05-01 18:21:37 -04:00
Martin Cech 6ef129ed60 data libraries: streamlined deleting and undeleting datasets, filter to include deleted dataset on every folder, better errror handling, some refactoring 2014-04-30 16:38:56 -04:00
Martin Cech 89d424dae9 data libraries: new API for deleting LDAs, UI improvements, download router flow changes 2014-04-29 18:11:06 -04:00
Martin Cech 7b06f76cca data lirbaries: support for showing deleted datasets in the folderview 2014-04-28 15:15:25 -04:00
Martin Cech 514148722a data libraries: improved folder rendering flow 2014-04-25 15:36:39 -04:00
Martin Cech 479337bd56 data libraries: default sorting; cleanup; refactor; jslint; start on getting rid of modals for library/folder creation 2014-04-23 17:31:01 -04:00
Carl Eberhard 865805627e History/HDA UI: pass allow_user_dataset_purge from Galaxy.config to history-panel and hda-edit and respect by not rendering purge controls if false 2014-04-22 13:16:50 -04:00
Carl Eberhard 10d5c0f920 UI: rework zh and ja locale data 2014-04-22 11:58:22 -04:00
Martin Cech d70e804d65 rename biostar menu link 2014-04-22 10:53:35 -04:00
Martin Cech da5ba4c711 data libraries: improved chaincall for importing datasets into history, some cleanup 2014-04-21 17:31:36 -04:00
Martin Cech e520630b7e data libraries: don't allow adding dataset within deleted library; better error message handling 2014-04-21 16:28:14 -04:00
Martin Cech 2c0c472f09 data libraries: don't allow creating folders within deleted library 2014-04-21 15:48:19 -04:00
John Chilton 10ffa53659 Pack scripts. 2014-04-21 14:28:47 -05:00
Daniel Blankenberg 276f0b80a2 Fix for masthead link for biostar mainpage. 2014-04-21 12:12:03 -04:00
Carl Eberhard 1a88077a9a Metrics: make the cache use localStorage for persistence 2014-04-21 11:37:26 -04:00
John Chilton 0b5b547357 Pack scripts. 2014-04-20 11:25:40 -05:00
Martin Cech 8891243e69 data libraries: small API changes; bugfix; deferred queue for adding datasets from history to library; permission handling work 2014-04-18 17:16:58 -04:00
Carl Eberhard fd5e9d2d2c QA, metrics-logger: finish tests for existing; casperjs: restore correct return value for loggedInAs 2014-04-18 15:58:29 -04:00
Carl Eberhard 302f2109ed QA: more testing of metrics logger 2014-04-18 12:58:20 -04:00
Carl Eberhard a434c454f5 Client app: allow bootstrapping data as require dependency, use window-scoped 'on ready' fn (for now), mixin Backbone.Events; galaxy.panels.mako: fix app ready v. doc ready order; Fix target fo addLogging; history.mako: simplify 2014-04-18 09:34:16 -04:00
Daniel Blankenberg 1899f37cd1 Remove 'galaxy' tag as default now that we are using a custom biostar site. 2014-04-17 13:03:02 -04:00
Jeremy Goecks 26051b1957 Trackster: move browser routing into TracksterView so that hash-based location routing works for both private and shared visualizations. 2014-04-17 09:47:41 -04:00
Martin Cech db752de9d3 data libraries: API improvements; add datasets from history to folder; folder contents sorting; progressive rendering; new error code; new API endpoint; js model comparators; Galaxy.currUser defensive programming; 2014-04-16 16:27:13 -04:00
Carl Eberhard 05d113deb1 Temporary fix to galaxy.panels.mako to ensure AMD order 2014-04-15 15:06:40 -04:00
Carl Eberhard 0c5a417268 UI: add GalaxyApp to base_panels.mako; add requirejs i18n plugin and nls/zh, nls/ja locale files, wire into _l client localizer, remove previous localization cruft; remove reliance on history_panel.mako 2014-04-15 12:31:33 -04:00
Daniel Blankenberg 86f167680c Update packed scripts 2014-04-15 12:00:02 -04:00
Martin Cech 4320c71bd8 data libraries: initial work on importing datasets from histories: fetching history list, fetching and displaying history contents
repaired bug in unbinding nested views
2014-04-14 14:09:36 -04:00
Carl Eberhard 6672b8db2c Metrics: remove double parsing of JSON from server-side, add GalaxyApp object with config and user, tie metrics-logger to GalaxyApp 2014-04-14 13:00:06 -04:00
Martin Cech 01cd002652 data libraries: API improvements, access permissions work, started with UI for adding files from history work 2014-04-11 17:29:36 -04:00
Carl Eberhard 4d3132f02f merge next-stable 2014-04-11 16:48:28 -04:00
Carl Eberhard d87eca5b67 Pack data.js from 86f93a1 2014-04-11 16:46:50 -04:00
Carl Eberhard f47f539d43 pack scripts 2014-04-11 16:41:45 -04:00
Jian-Long Huang 5bb6d9534c Fix the column alignment in the tabular format data 2014-04-12 03:29:53 +08:00
Jeremy Goecks 80b603902a Merge next-stable branch to default. 2014-04-10 17:21:38 -04:00
Jeremy Goecks 28ddf4bcc2 Updates to Sweepster to get it working again. 2014-04-10 17:21:00 -04:00
Carl Eberhard 8f179efe71 Metrics: initial commit of client side logger 2014-04-10 16:28:16 -04:00
Martin Cech 4bea6249f3 forgotten files for previous commit
data libraries: API refactoring and improvements; backbone decoupling; role UI first implementation
2014-04-10 15:07:01 -04:00
Martin Cech 0dd3187401 data libraries: API refactoring and improvements; backbone decoupling; role UI first implementation 2014-04-10 15:05:33 -04:00
Carl Eberhard d7dda26c58 Remove debugging statements 2014-04-08 14:14:17 -04:00
Jeremy Goecks 9d64557de5 Trackster: update jQuery selector so that all tool inputs are updated on change rather only <input> elements. Pack script. 2014-04-08 12:07:50 -04:00
Jeremy Goecks 910fc94c94 Pack script. 2014-04-07 12:22:01 -04:00
Jeremy Goecks 086e37c557 Trackster: only draw incomplete features when displaying features, not coverage data. Pack script. 2014-04-04 16:33:06 -04:00
Jeremy Goecks 18c2e3fc71 Trackster: fixes for creating and resizing composite line tracks. 2014-04-03 14:33:48 -04:00
Martin Cech 1758f3d63a libraries: removed unused and deprecated function 2014-04-02 17:21:06 -04:00