Michael R. Crusoe
c00967cca4
Python 3.8 as new minimum version
...
Fixes: https://github.com/galaxyproject/galaxy/issues/16394
Also upgrade code to Python 3.8 syntax with:
```
ack --type=python -f | grep -v '^lib/galaxy/schema/bco/\|^lib/galaxy/schema/drs/\|lib/tool_shed_client/schema/trs.*.py\|^tools/\|^.venv/\|^.tox/' | grep -v '^lib/galaxy/files/sources/\|^lib/galaxy/job_metrics/\|^lib/galaxy/objectstore/\|^lib/galaxy/tool_util/\|^lib/galaxy/util/' | xargs pyupgrade --py38-plus
```
2023-11-26 18:34:09 +00:00
Nicola Soranzo
45fb60c530
Ignore UP036 ruff check in check_python.py
2023-10-28 17:35:12 +01:00
Dannon Baker
623a5e165a
Apply black formatting.
...
Apply isort.
2022-02-03 07:42:20 -05:00
Nicola Soranzo
0bdc93a7cc
Drop support for Python 3.6, add Python 3.10
2021-12-08 08:14:10 +00:00
Nicola Soranzo
9d74bba7fb
Drop support for retired Python 3.5
...
Upgrade syntax using `pyupgrade --py36-plus` .
Manually drop several `six` imports.
Also:
- Remove broken pr_cache in scripts/bootstrap_history.py
- Fix broken prefix removal in lib/galaxy/tool_util/deps/mulled/mulled_build.py
2020-10-07 11:52:13 +01:00
Nicola Soranzo
e8466d002a
Python 2.7 is officially unsupported on 20.05
2020-06-20 19:04:57 +01:00
Nicola Soranzo
437f51c2a6
Create Python3 virtualenv by default
...
- Allow specifying Python to use to create virtualenv using GALAXY_PYTHON
environment variable.
- Integrate Python support docs from https://galaxyproject.org/admin/python/
- Update virtualenv installation to use v16.7.9
2020-02-09 02:54:24 +00:00
Nicola Soranzo
6589bf3314
Drop support for Python 3.4. Officially support Python >=3.5
...
xref. https://github.com/galaxyproject/galaxy/issues/7260
2019-01-31 23:31:44 +00:00
Nicola Soranzo
f4203ca051
Fix errors reported by flake8 3.6.0
...
Ignore W504.
2018-10-24 23:22:19 +01:00
mvdbeek
6120183182
Allow Python 3 if in a virtualenv
2018-06-13 03:12:45 +01:00
Nicola Soranzo
21b44bf348
Fix all E201 and E202 style errors
...
using the following command:
```
autopep8 -i -r --exclude $(sed -e 's|^|./|' -e 's|/$||' .ci/flake8_blacklist.txt | paste -sd,) --select E201,E202 .
```
2017-08-17 11:35:39 +01:00
Nicola Soranzo
3d57c22b63
Fix I201 errors from flake8-import-order
...
Also fix Python3 compatibility.
Remove unused method
galaxy.tools.parameters.sanitize.ToolParameterSanitizer.restore_param() .
2016-11-23 18:31:04 +00:00
Nicola Soranzo
1d17a29c79
Fixes for pycodestyle 2.2.0
2016-11-15 16:56:50 +00:00
Junzhou Wang
f68a8198da
Python3: scripts/cleanup_datasets scripts/data_libraries
2016-06-25 21:49:25 -04:00
peterjc
7e5d99ebb2
Update check_python.py now dropping Python 2.6
...
Closes #1596
2016-03-07 15:50:05 +00:00
Nicola Soranzo
6569c2dcc3
Partially lint scripts/ .
2015-07-13 20:13:28 +01:00
James Taylor
d02155ad7b
Require Python 2.6+ and remove various compatibility patches for 2.4 and 2.5
2013-04-09 11:57:38 -04:00
Carl Eberhard
d97ada4bb5
minor docstring adds in /scripts
2012-08-03 13:31:48 -04:00
Peter Cock
e6628b9b66
Update scripts/check_python.py (Python 2.4 not supported)
2012-04-17 13:48:51 +01:00
Nate Coraor
478470e8b0
Testing Python 2.7.
2011-06-08 23:50:07 -04:00
Nate Coraor
006716f53a
Egg support overhaul, introduces a number of fixes to the ABI recognition, better build scripts, a rewrite of the eggs library and eliminition of the need for python -ES
2010-03-01 15:41:30 -05:00
Nate Coraor
96a4144bc3
Fix another exception error (only in 2.4) with check_python.py
2010-01-28 13:37:53 -05:00
Nate Coraor
ae12fd7d5b
Prevent sys.exit() from being caught by the try-except block in check_galaxy.py (since sys.exit() actually raises an exception, but one not derived from Exception).
2010-01-05 15:17:10 -05:00
Nate Coraor
1f5e079a3a
python run from virtualenv sets up site.py to pull things from the real python's lib directory, so 'python -S' breaks it. To fix this, have the check_python.py script check for virtualenv and output the arguments that should be used to start python ('python -E' for virtualenv, 'python -ES' for real), then use these arguments anywhere 'python -ES' was used in the past.
2010-01-04 12:51:34 -05:00
Nate Coraor
531e8043ad
Officially support Python 2.6.
2009-11-13 10:39:15 -05:00
Nate Coraor
1561cd8af8
Upgrade Paste/PasteDeploy/PasteScript. Paste can go no further without changing the way we stream templates and tarballs.
2009-11-12 13:12:12 -05:00
Nate Coraor
c9e0e1ea17
A get_platform() monkeypatch for fat versions of python on Mac. Also do more explicit version checking ( >= 2.4, <= 2.5 ) and provide helpful messages if the version is not supported.
2009-10-27 11:36:57 -04:00
Michael R. Crusoe