Minh Vu
a59e0b4a27
refactored
2023-04-27 11:21:29 +02:00
Minh Vu
aecbe0cff1
Option to display a different message on the export citations tool page
2023-04-27 11:19:33 +02:00
Dannon
47966341c9
Merge pull request #15628 from ElectronicBlueberry/training-recommendations
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Add suggested Training material to Tool Form
2023-04-26 07:59:20 -04:00
mvdbeek
3d836f09a7
Merge branch 'release_23.0' into dev
2023-04-19 14:43:36 +02:00
Laila Los
568624ce70
match using tool id
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rename repository to owner
2023-04-17 08:39:17 +02:00
Laila Los
0a26f58bc4
fix config description
2023-04-17 08:39:15 +02:00
Laila Los
8f6127a41f
add configurable gtn integration
2023-04-17 08:39:09 +02:00
mvdbeek
0542ebf8aa
Add `ca_certs option` for sentry client
2023-04-16 22:57:59 +02:00
Dannon Baker
fd0690a8fb
Drop use_legacy_history from config -- this is no longer possible.
2023-03-28 10:23:59 -04:00
mvdbeek
bd753160bb
Merge branch 'release_23.0' into dev
2023-03-15 19:20:21 +01:00
John Davis
dda56025cc
Run make config-rebuild
2023-03-13 11:59:39 -04:00
Dannon Baker
3aac36d588
Drop myexperiment.org exports
2023-02-14 10:45:52 -05:00
mvdbeek
a31eb0489c
Use sentry-fastapi integration, expose sampling rate
2023-02-10 13:03:09 +01:00
Benno Weiss
b906e4296d
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into beacon-integration
2023-01-17 18:30:22 +01:00
Dannon Baker
9de4e72563
Rebuild config including gravity stuff
2022-12-22 21:25:41 -05:00
Laila Los
7d7ac4111b
rebuild config
2022-12-22 16:59:27 +01:00
Laila Los
34cbbc5ad6
add persistant theme swapping
2022-12-21 14:01:34 +01:00
Dannon
241b245cbc
Merge pull request #14791 from anuprulez/update_tool_recommendation
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Update tool recommendation API using transformers (neural network)
2022-12-20 20:01:46 -05:00
Martin Cech
063405a1cd
replace the png favicon with svg version
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goes down from 16kb to 9kb and preserves all details
add padding to masthead logo
it now has no padding in the image itself
Add margin to svg
drop padding
since we decided to include it in logos
Slightly increase margin further
2022-12-20 15:44:07 -08:00
Dannon Baker
c0fca38cf0
Config rebuild
2022-12-19 15:32:36 -05:00
John Chilton
4bd80ce6ef
Flush out documentation and service-info for DRS API a bit.
2022-12-08 10:08:01 -05:00
John Chilton
8ff9fe2610
Implement initial GA4GH DRS Support.
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- Implement APIs for serving Galaxy's public datasets as DRS objects.
- Implement support in galaxy.files.uris for DRS URIs so that upload, etc... can use DRS URIs from other data repositories.
The ways this can be improved are endless:
- New object ID patterns can be implemented to allow access to composite data, metadata files from a bundle view of datasets.
- New object ID patterns can be implemented to allow access to collections as bundles of datasets.
- More auth types and AccessMethods could be implemented for loading datasets from clients.
- Some sort of scheme for providing authenticated URLs to non-public data could be implemented to provide access to more of Galaxy's data if user's can implement.
Despite all these limitations - I think having the guts in like this provide useful points for interested parties to go and add functionality to enable their desired usecases.
2022-12-08 10:07:11 -05:00
Paprikant and Wolfgang Maier
095ade1a81
Update doc/source/admin/galaxy_options.rst
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Co-authored-by: Wolfgang Maier <maierw@posteo.de >
2022-12-07 10:55:45 +01:00
Benno Weiss
5bd9212560
added admin config for beacon sharing
2022-12-07 10:53:24 +01:00
guerler
72fd52f087
Deprecate brand title text option, logo now contains text
2022-11-30 17:19:07 -05:00
Nate Coraor
1cdb7b5bcd
Replace XML job conf sample with YAML.
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Prefer loading job_conf.yml, fall back to job_conf.xml with a warning if
it exists.
2022-11-17 19:58:24 -05:00
John Davis
b11c18eb21
Merge pull request #14825 from neoformit/dev-html-email
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Looks great! Thanks, @neoformit
For future ref/todo: we do need a more systematic/unified approach to handling path construction that handles tests that are arun both as standalone unit tests and as part of package tests (as per observation by @neoformit)
2022-11-10 11:30:42 -05:00
Cameron Hyde
e2119e4750
Update config description
2022-10-20 14:25:49 +10:00
Cameron Hyde
dc27533344
Account activation email rendered from text/html templates
2022-10-20 14:06:17 +10:00
Marius van den Beek
241da69672
Merge pull request #12288 from dannon/sorted-tools-in-sections
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Automatically sort tools in sections by name
2022-10-17 10:49:17 +02:00
Marius van den Beek
ce26561b33
Merge pull request #14708 from jdavcs/dev_celery_config
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Enable fine-grained celery configuration
2022-10-17 10:37:24 +02:00
John Davis
d310635895
Celery config option result_backend is required
2022-10-14 19:28:17 -04:00
John Davis
d26ad37e97
Remove celery_backend from config_schema, use celery_conf instead
2022-10-14 19:28:17 -04:00
John Davis
b6b49897dc
Remove celery_broker from config_schema, use celery_conf instead
2022-10-14 19:28:17 -04:00
John Davis
2de79dd7d1
Add default task routes to config schema
2022-10-14 19:28:17 -04:00
John Davis
71829ae6af
Add more details to setting db engine options to config schema
2022-10-14 13:18:35 -04:00
Dannon Baker
c8659d1d4a
Add toolbox_auto_sort config option, expose in config manager.
2022-10-06 22:20:06 -04:00
guerler
8350ff212e
Add post logout url to configuration
2022-09-05 14:12:50 -04:00
John Davis
241647c1f1
Run make config-rebuild
2022-08-31 18:08:26 -04:00
Nate Coraor
4151f176bf
Merge remote-tracking branch 'upstream/release_22.05' into dev
2022-08-17 16:37:02 -04:00
Nate Coraor
3522fd3a49
Add log rotation options and update logging documentation
2022-08-15 20:54:02 -04:00
Nicola Soranzo
575a1d8358
Merge pull request #14430 from bernt-matthias/unlink-job-template
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Deprecate `cluster_files_directory` and store DRMAA job template and PBS shell, error and out files in job working directory
2022-08-13 01:00:10 +01:00
Matthias Bernt
b81b2f827e
remove more leftover references to cluster_files_directory
2022-08-12 16:07:35 +02:00
Cameron Hyde
ffb9b34d89
Update config schema descriptions for tool search
2022-07-28 17:32:32 -05:00
Cameron Hyde
2ca6e7353b
Add new config params for tool search
2022-07-28 17:29:58 -05:00
mvdbeek
33a3a203f4
Decrease monitor sleep in tests
2022-05-26 12:48:43 +02:00
mvdbeek
d845f2a880
Update config file description
2022-05-25 19:46:05 +02:00
Dannon
71ec553098
Merge pull request #13829 from ahmedhamidawan/Custos_login_enh
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Custos Login Ambiguity enhancement
2022-05-09 06:23:38 -07:00
Nicola Soranzo
5dcafe752b
Update Celery and Kombu links
2022-05-06 13:29:14 +01:00
Dannon Baker
754da9d701
Example custos-specific login onfig value serialized through to client
2022-04-29 15:59:42 -04:00
Minh Vu