mvdbeek
1e856fa8a4
Fill in 20.09_announce.rst
2020-11-05 19:18:05 +01:00
52af2f65a0
Release note fixes
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Co-authored-by: selten <selten@users.noreply.github.com >
Co-authored-by: Sergey Golitsynskiy <sgolitsynskiy@gmail.com >
2020-11-05 19:18:05 +01:00
Helena Rasche and Sergey Golitsynskiy
50af18b7e8
Apply suggestions from code review
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Co-authored-by: Sergey Golitsynskiy <sgolitsynskiy@gmail.com >
2020-11-05 19:18:05 +01:00
Helena Rasche
b6cfa36fe1
add mvp viz
2020-11-05 19:18:05 +01:00
Helena Rasche
2837fa985b
Add user facing release notes
2020-11-05 19:18:05 +01:00
mvdbeek
8cc1a34b35
Make a couple of enhancements major-ish
2020-11-05 19:18:05 +01:00
mvdbeek
5fcf60a02f
Release notes for 20.09
2020-11-05 19:18:05 +01:00
mvdbeek
7df17504bf
Merge branch 'release_20.09' into dev
2020-11-05 19:03:01 +01:00
Sergey Golitsynskiy
4890ba17d5
Update docs to reflect uuid/id, file_path updates
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Run `make config-rebuild`
2020-11-03 16:07:30 -05:00
Matthias Bernt
ec8643bf05
drop IUC conda channel
2020-11-03 10:44:30 +01:00
Helena Rasche
e506ebf10c
Remove option for url
2020-10-30 18:00:04 +01:00
Helena Rasche
646b133bb3
Add EDAM topics to unannotated tools
2020-10-30 17:59:45 +01:00
Helena Rasche
1733f462dd
Parse EDAM ontology to decode names
2020-10-30 12:37:23 +01:00
Helena Rasche
5728189085
Implement simple edam toolbox using non-readable ids
2020-10-30 10:25:14 +01:00
Enis Afgan
1afb79d2b5
Merge pull request #10540 from guerler/enable_custom_logo
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Allow admins to add an additional custom logo to the masthead
2020-10-29 09:40:35 -04:00
Sergey Golitsynskiy
31b908226a
Set uwsgi's honor-stdin when in debug mode
2020-10-28 14:08:25 -04:00
Nolan Woods
4ee6a1e6a0
Correct data table config documentation
2020-10-28 09:27:16 -07:00
Nolan Woods
ccf2eadd38
Document data manager repository layout
2020-10-28 08:41:42 -07:00
John Chilton
ddcaddd40e
Merge pull request #10537 from ic4f/dev_config_doc_path
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Generate path resolution note for sample file, docs
2020-10-27 14:55:28 -04:00
mvdbeek
d0047c1085
Merge branch 'release_20.09' into dev
2020-10-24 16:21:52 +02:00
guerler
2928b5256c
Allow admins to add custom logo to the masthead
2020-10-23 11:54:36 -04:00
Marius van den Beek
528bbc646b
Merge pull request #10514 from dannon/cut-comm-server
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Drop communication server
2020-10-23 11:43:20 +02:00
Marius van den Beek
ae87319b0e
Merge pull request #10530 from innovate-invent/patch-1
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Add awesome-galaxy repo link to docs
2020-10-23 10:01:39 +02:00
Dannon
54294ba056
Merge pull request #10525 from jmchilton/more_tags
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Add more tags to Github.
2020-10-23 00:21:41 -04:00
Dannon
8dbca5b379
Update doc/source/index.rst
2020-10-23 00:19:08 -04:00
Sergey Golitsynskiy
066a9bc78a
Generate path resolution note for sample file, docs
2020-10-22 22:00:10 -04:00
Nolan Woods
3de475a4d6
Add awesome-galaxy repo link
2020-10-22 11:13:29 -07:00
John Chilton and Nicola Soranzo
aeacc1a7fe
Update doc/source/project/issues.rst
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2020-10-22 13:47:00 -04:00
Dannon Baker
434d406bde
Cleanout communication server.
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I don't think anyone's actively using this anymore, and most
communication has moved to (also embeddable) things like Gitter, etc.
2020-10-22 09:58:34 -04:00
Dannon Baker
d0ad39a909
Rebuild config for 20.09, including missing option in galaxy_options doc
2020-10-22 09:42:01 -04:00
John Chilton
9c1a005ec2
More tags.
2020-10-22 09:17:41 -04:00
mvdbeek
4842e0dbb9
Fix maximum_workflow_jobs_per_scheduling_iteration and set to 1000 as default value
2020-10-21 18:28:58 +02:00
Kaivan Kamali
3904b68a42
Move Galaxy configuration file for VS Code debugging into Galaxy repo
2020-10-21 12:14:55 -04:00
Kaivan Kamali
04ef92829f
Update link for Galaxy configuration file in Galaxy debug document
2020-10-21 11:57:12 -04:00
Dannon
8959aa9213
Merge pull request #10258 from hexylena/release-diff
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Add script to diff two release config files.
2020-10-09 16:39:47 -04:00
Nicola Soranzo
9d74bba7fb
Drop support for retired Python 3.5
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Upgrade syntax using `pyupgrade --py36-plus` .
Manually drop several `six` imports.
Also:
- Remove broken pr_cache in scripts/bootstrap_history.py
- Fix broken prefix removal in lib/galaxy/tool_util/deps/mulled/mulled_build.py
2020-10-07 11:52:13 +01:00
Frederic Sapet
aa2e06d0db
update SQLNamedQuery and add a link to Galaxy security passwords documentation
2020-10-02 14:14:54 +02:00
Nolan Woods
8c696533bb
Update mq.md
2020-10-01 16:48:26 -07:00
Nolan Woods and Nicola Soranzo
a18e8148ab
Update doc/source/admin/mq.md
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2020-10-01 16:37:22 -07:00
Nolan Woods and Nicola Soranzo
50afc1bf50
Update doc/source/admin/mq.md
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2020-10-01 16:37:13 -07:00
Nolan Woods and Nicola Soranzo
706dd35a9c
Update doc/source/admin/mq.md
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2020-10-01 16:36:55 -07:00
Nolan Woods and Nicola Soranzo
383eb15c06
Update doc/source/admin/mq.md
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2020-10-01 16:36:37 -07:00
Nolan Woods and Nicola Soranzo
be5574eddc
Update doc/source/admin/mq.md
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2020-10-01 16:36:28 -07:00
Nolan Woods and Nicola Soranzo
3955bf0292
Update doc/source/admin/mq.md
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2020-10-01 16:35:27 -07:00
Nolan Woods
40790bd5a5
Stub MQ docs
2020-10-01 13:57:15 -07:00
Nicola Soranzo
db904f2056
Don't allow datatype change by default if it's composite
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Also re-use the HDA deserializer in the dataset controller.
2020-09-24 09:39:58 +01:00
mvdbeek
ebcf9e67bd
Merge remote-tracking branch 'upstream/release_20.05' into dev
2020-09-22 16:16:19 +02:00
Helena Rasche
cac94a0f24
output
2020-09-22 12:06:06 +02:00
Nate Coraor
ec106604d2
Include an upgrade warning for 20.05 regarding the drop of the blue
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symlink in static
2020-09-21 16:15:12 -04:00
Marius van den Beek
4ccd314c2a
Merge pull request #10172 from ic4f/dev_config_debug2
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Uniformly process config files
2020-09-08 17:00:32 +02:00
mvdbeek