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Commit Graph
937 Commits
Author SHA1 Message Date
Bjoern Gruening bfbb332fc7 cleanup the supported filestypes for Nora 2021-03-05 14:47:31 -05:00
Dannon Baker 43e5ee0e64 Nora visualization version bump incorporating a few upstream bugfixes 
(protocol fix supporting https, which was noticed on on usegalaxy.org,
more)
 2021-02-24 22:45:08 -05:00
Dannon Baker a93ee16dc8 Fix entrypoint 2021-01-12 08:49:17 -05:00
Dannon Baker afc87f99e4 Test deploy w/ prebuilt files 2021-01-12 08:48:21 -05:00
Bjoern Gruening 8afa197856 new config 2021-01-10 08:00:57 -05:00
Bjoern Gruening d7ba38915f Add the 3D Visualisation from Nora 
add nora

change nora plugin

(rebased to drop artifacts)
 2021-01-10 08:00:29 -05:00
greg 8e41f40041 Change code per review 2020-12-31 07:56:57 -05:00
greg 72747da5be Expand image formats for viewing in OpenSeadragon 2020-12-30 15:10:56 -05:00
Dannon 18f519c029 Merge pull request #10756 from gregvonkuster/osdragon 
Add the OpenSeadragon viewer for deep zoom images
 2020-12-02 11:31:36 -05:00
Dannon Baker f744bfa3ab Tweak OSD plugin build, include images. 
No need to bundle this since it's prebuilt -- this simply copies it
(including images and maps which were left out before) for staging,
which is faster and more complete.
 2020-12-02 09:58:55 -05:00
greg 7649b73afd Attempt to use the newer viz packaging approach 2020-12-02 09:58:53 -05:00
greg 680357ef5f Add the OpenSeadragon viewer for deep zoom images 2020-12-02 09:57:56 -05:00
Björn Grüning 4836f19004 Merge pull request #10404 from guerler/add_vis_options 
Adds Visualization options to Markdown Editor
 2020-12-01 22:46:58 +01:00
guerler 52bc2b92c1 Allow videos and audio to be embedded into reports 2020-11-30 18:54:01 +01:00
mvdbeek eaa64b95c9 Merge branch 'release_20.09' into dev 2020-11-24 10:07:19 +01:00
tmcgowan 833ef38c59 fix reference error 2020-11-20 15:23:18 -06:00
mvdbeek 2f5742c7c0 Merge branch 'release_20.09' into dev 2020-11-03 16:04:22 +01:00
Marius van den Beek 956020ce00 Merge pull request #10355 from dannon/mvpcleanup 
[20.09] Viz - mvpapp fixes and refinement
 2020-11-03 15:00:37 +01:00
guerler b2239bf640 Use previously unused embeddable attribute in visualization xmls to hide visualization not suitable for markdown reports 2020-10-20 16:59:00 -04:00
guerler fb9d2858de Remove unused ngl option 2020-10-20 11:54:42 -04:00
guerler 0b65f42ff9 Merge branch 'dev' into add_vis_options 2020-10-19 15:34:46 -04:00
guerler 77c5efb96b Properly parse url arguments to chart options, fix pv viewer config 2020-10-19 14:57:25 -04:00
mvdbeek d0ad9b624c Merge branch 'release_20.09' into dev 2020-10-14 10:10:39 +02:00
guerler 0e455f9813 Modification of regex to accept vertical bar in markdown argument name 2020-10-12 20:25:39 +02:00
guerler cde796954d Repack cytoscape 2020-10-12 20:25:39 +02:00
guerler 4b357178a2 Use preset as default for cytoscape viewer 2020-10-12 20:25:39 +02:00
Dannon Baker f4ee52558a Bugfix: include an index link in visualization base to allow the app to derive baseUrl 2020-10-09 07:24:59 -04:00
guerler bc32947c27 Repack cytoscape 2020-10-05 15:37:03 +02:00
guerler 1b52728ead Use preset as default for cytoscape viewer 2020-10-05 15:33:46 +02:00
Dannon Baker af42c8eb6d Restructuring, stage for es6 base without script-loader (which is deprecated anyway) 2020-10-02 18:10:50 -04:00
Dannon Baker 68168d81d7 mvpapp -- swap igv to npm vs static 2020-10-02 12:47:35 -04:00
Dannon Baker 8a26dbe6f6 Drop static cruft 2020-10-01 22:14:29 -04:00
Dannon Baker 09674f3dc8 mvpapp - Fix dist paths for font loading and assets 2020-10-01 22:14:03 -04:00
Dannon Baker 1d92c198ef Build heatmap (cluster and default) with plugin builder, stage correctly, unlink from Galaxy, drop artifacts 2020-09-25 12:25:30 -04:00
Dannon Baker b7e37d8c2d Stage ngl to dist 2020-09-24 18:02:24 -04:00
Dannon Baker f07aab0d1d Fix ngl viz; use autobuilder 2020-09-24 18:01:44 -04:00
Dannon Baker aba85404db Drop unused dependencies for pv 2020-09-24 15:36:21 -04:00
Dannon Baker e594b1bd38 Build pv.js into dist, as is standard now 2020-09-24 14:45:15 -04:00
Dannon Baker 78866e1fa3 Drop underscore/jquery usage in PV viewer 2020-09-24 14:44:51 -04:00
Dannon Baker 2b07a0b2a5 Fix PV Protein Viewer build 2020-09-24 13:25:27 -04:00
Dannon Baker 016dd80412 Swap bootstrap to npm-installed 2020-09-21 13:55:06 -04:00
Dannon Baker fb63bf87e1 Include base datatables style in place for now. 2020-09-21 13:36:55 -04:00
Dannon Baker bd1a5a9c29 Fix build; need to followup with bugfixes during freeze. 2020-09-21 13:36:55 -04:00
tmcgowan 0fee3e1909 Move mvp to webpack installation 2020-09-21 13:36:55 -04:00
tmcgowan 08e0640804 mvpapp as webpack 2020-09-21 13:36:55 -04:00
tmcgowan 1cc15e5bbd Add galaxyp MVP visualization plugin 2020-09-21 13:36:55 -04:00
Dannon Baker b04484c197 Fix link resolution for new locations. 2020-09-16 18:31:11 +02:00
Dannon Baker 3c8173c930 The config file name *must* be named the same as the parent directory, for... reasons? TODO: refactor this to just accept a config.xml anywhere 2020-09-16 18:31:11 +02:00
Dannon Baker b4f8c2a82c Unify video/audio player sources, keep plugins separate as children 2020-09-16 18:31:11 +02:00
Dannon Baker 6741fc6dbf Leverage pre-staged video_player.css in dist to avoid having to create this directory 2020-09-16 18:31:11 +02:00