Commit Graph
44 Commits
Author SHA1 Message Date
Jeremy Goecks 3258a3359f Enable Trackster visualizations to be added to Scratchbook via dynamic loading rather than iframes. 2014-09-29 17:12:03 -04:00
Carl Eberhard d3b51aea39 UI, History: add copy method to model; fill out history collection; pack scripts 2014-08-15 09:58:15 -04:00
Aysam Guerler 9c15798dfa Fix for grids, pack scripts 2014-07-02 16:05:41 -04:00
Jeremy Goecks dc20caec65 Circster: add config options for min/max values and color. 2014-06-26 10:56:05 -04:00
Aysam Guerler 4d241eb79a Updated UI elements and styles, added zoomable charts 2014-05-30 21:42:28 -04:00
Jeremy Goecks 910fc94c94 Pack script. 2014-04-07 12:22:01 -04:00
Jeremy Goecks 579ebf5157 Circster fixes: (a) make compatible with new config object; (b) fix formatting issue with negative values; and (c) clean up debugging statements. Pack scripts. 2014-04-02 10:15:54 -04:00
Jeremy Goecks ebaa1c39d3 Visualization JS: fix incorrect method call. Pack script. 2014-03-26 17:53:07 -04:00
Jeremy Goecks f0e4046998 Pack scripts. 2014-03-26 17:39:58 -04:00
Jeremy Goecks c5a5d0347b Fix bugs that prevented saving visualizations from Circster. To do this, introduced a mixin for custom toJSON methods. Pack scripts. 2014-02-05 16:22:17 -05:00
Martin Cech 5727f13643 packed js that was missing 2014-01-23 13:20:41 -05:00
Jeremy Goecks b675432a2c Replace Backbone-relational usage with manually model chaining and remove backbone-relational scripts. Fix default colors bug in Trackster. Pack scripts. 2013-11-26 14:50:41 -05:00
Aysam Guerler 8313e096c1 Add datatypes to api and connect with file type selector of the upload front end 2013-10-11 14:29:38 -04:00
Jeremy Goecks 7d6d29158a Trackster: (a) fix bug that unintentionally modified drawing region; (b) more reference track cleanup; (c) remove console logging statements. Pack scripts. 2013-10-11 11:53:13 -04:00
Aysam Guerler 5b1c997998 Introducing backbone based modal into Trackster and Circster 2013-09-30 14:11:38 -04:00
Jeremy Goecks 3e42d82b57 Trackster: bug fixes and documentation improvements. Pack scripts. 2013-09-24 17:17:14 -04:00
Aysam Guerler 5a05a52775 Unify parameter and url access in front end 2013-08-20 18:51:47 -04:00
Jeremy Goecks 979c041d65 Trackster performance fix: extend Cache to support any object that can be converted to a String. Use this enhancement to avoid creating Backbone objects, which can be slow. 2013-06-12 16:02:19 -04:00
Jeremy Goecks 755256aff2 Trackster: for variant track painter, only draw loci in viewing region. 2013-05-22 15:23:15 -04:00
Jeremy Goecks 7d7f04a5b4 Viz framework fixes: (a) add hda_ldda attribute to API dicts of HDAs and LDDAs; (b) remove summary tree from Circster; (c) make Circster compatible with recent change to get HDAs from API. Pack scripts. 2013-05-21 14:37:51 -04:00
Carl Eberhard df1927422c Visualizations framework: allow users to associate custom visualizations with models, datatypes, etc. via an xml configuration file (visualizations_conf.xml) 2013-05-17 14:45:07 -04:00
Jeremy Goecks 15ca057151 Pack scripts. 2013-02-28 16:55:33 -05:00
Jeremy Goecks 6ebb660cba Trackster: prevent data requests for very small regions by using a (configurable) minimum region size. This improves performance when zoomed in on small regions. Pack scripts. 2013-02-19 10:16:21 -05:00
Jeremy Goecks 283cb406f9 Move grid element initialization to main body to prevent it from happening too early. Pack scripts. 2013-02-17 14:59:02 -05:00
Jeremy Goecks 7b19a84ba8 UI framework enhancements: (a) upgrade to jQuery UI 1.9.1; (b) remove version information from jQuery UI file names; (c) add generic jQueryUI search+select combobox widget; (d) use combobox widget for choosing dbkey in Trackster visualizations. Also pack scripts. 2012-10-30 09:07:29 -04:00
Jeremy Goecks 2607d1b3c0 Pack scripts. 2012-10-20 16:40:38 -04:00
Jeremy Goecks 9c953192be Add backbone model, collection, and view for configuration settings. Pack scripts. 2012-10-19 11:55:49 -04:00
Jeremy Goecks ef2c8f54ec Viz client-side framework: generalize add_datasets function and change name to select_datasets, general code cleanup, and packed scripts. 2012-10-12 17:22:51 -04:00
Carl Eberhard d9747a836f scatterplot: added stats panel, added chart config panel; dataproviders/basic.py: compute, pass gen. stats in response.meta; base-mvc: fixed bug in chrome LoggableMixin; pack scripts 2012-10-10 17:55:34 -04:00
Carl Eberhard 49d62fe354 scatterplot: improved adj. for varying y-axis sizes; pack scripts 2012-10-02 15:36:56 -04:00
Jeremy Goecks 992669d816 Viz/UI framework fixes and enhancements. Pack scripts and add new packed scripts. 2012-09-28 12:07:56 -04:00
James Taylor 2297b49262 trackster: adding packed scripts 2012-09-17 15:23:45 -04:00
Jeremy Goecks ba70f84b8e Bug fixes for changeset 6243b992762c that enable tools to be run in Trackster. Also add URL to all datasets and pack scripts. 2012-09-15 17:06:36 -04:00
Carl Eberhard f6282874ec Added history.js templates: icon-button partial, hdaSummary, titleLink; packed scripts 2012-09-13 11:58:14 -04:00
Dannon Baker 86fd5335dc Pack scripts. 2012-09-12 13:05:15 -04:00
Jeremy Goecks 13cdd234b8 Pack scripts. 2012-09-05 22:28:32 -04:00
Jeremy Goecks 97ffa48a2b Add bigwig/bigbed support to Circster. Pack scripts. 2012-07-24 14:28:08 -04:00
Jeremy Goecks efc17f5f5f Render all tracks in Circster using track preferences. 2012-07-12 13:21:16 -04:00
Jeremy Goecks ca89711e1b Visualization framework enhancements: (a) support for unpacking complete genome/trackster visualizations and (b) Circster view now uses genome visualizations rather than individual datasets as model. 2012-07-09 09:45:34 -04:00
Jeremy Goecks 5571ce52ea Make bookmarks available in shared Trackster visualizations. 2012-07-05 09:31:19 -04:00
Jeremy Goecks 4550023b2d Fix Trackster bug and remove debugging code. Pack scripts. 2012-07-02 09:02:58 -04:00
Jeremy Goecks 3b08d37b98 Enhancements to enable paramamonster to be used via accessible/published visualizations. Pack scripts. 2012-07-01 22:04:40 -04:00
Jeremy Goecks f8f06c3706 Visualization infrastructure: (a) Backbone-ify cache and data managers; (b) push parameter value sampling code into Tool objects. Pack scripts. 2012-06-07 16:47:06 -04:00
Jeremy Goecks 5ba3cb6553 Place all JavaScript visualization code under static/scripts/viz directory. 2012-06-04 12:26:52 -04:00