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3 Commits
Author SHA1 Message Date
Daniel Blankenberg 8b4aea49cb Bug fix for signature of lib.galaxy_utils.sequence.transform.?NA_reverse_complement method. 2010-10-01 10:45:17 -04:00
Daniel Blankenberg 4ccb19f94b Add ability for reverse complement in e.g. FASTQ Manipulation tool to handle ambiguity codes. 2010-03-29 14:54:23 -04:00
Daniel Blankenberg 8082c6f36f Add a new FASTQ tool suite. Four FASTQ variants are supported: sanger, illumina, solexa and solid. 
Tools include:
	FASTQ Groomer convert between various FASTQ quality formats
	Combine FASTA and QUAL into FASTQ
	FASTQ joiner on paired end reads
	FASTQ splitter on joined paired end reads
	FASTQ to FASTA converter
	FASTQ Summary Statistics by column
	Filter FASTQ reads by quality score and length
	FASTQ Trimmer by column
	Manipulate FASTQ reads on various attributes
	Boxplot of quality statistics (Generic, with outliers)
 2010-02-23 16:48:07 -05:00