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7 Commits
Author SHA1 Message Date
Greg Von Kuster 0d1f540e99 Fixes for transferring files from external services using the http protocol. Automatic file transfers from Pac Bio SMRT Portal are functional for version 1.1.0. 2011-04-14 16:42:12 -04:00
Greg Von Kuster 9102fc3472 1. Add support for manual file transfer from external services to a Galaxy data library using scp. This is currently enabled via the enable_beta_job_managers flag. This should not currently be used because it hits the db significantly to determine if dererred jobs are queued for running. The plan is to use messaging for this, but that approach is not yet implemented. Rabbit mq is still being used to enable manual file transfer to Galaxy data libraries when the enable_beta_job_managers flag is not set. 
2.  Clean up the code that renders the jquery file browser plugin - things work much cleaner now.  One remaining item is handing the issue where rsh / ssh keys are not set.  Also clean up a lot of code related to manual file transfers in the requests_admin controller.

3.  In addition to the new ManualDataTransferPlugin, add the Pacific Biosciences SMRTPortalPlugin that automatically transfers files produced by SMRT Portal to a Galaxy data library.

4. Add the external service type config for Pac Bio SMRT Portal version 1.1.0.
 2011-04-13 13:52:05 -04:00
Ramkrishna Chakrabarty ba0e5491ae Added a new updater for number of sample datasets. The number of sample datasets now updates automatically. 
The sample states now gets updated only when barcodes are associated with them.
Fixed rename dataset bug for AB Solid external service.
 2011-01-14 15:09:43 -05:00
Greg Von Kuster d839983f21 Bug fixes and code cleanup related to recently implemented external services. 2011-01-13 16:14:25 -05:00
Ramkrishna Chakrabarty 7fe6167d94 More instances of sequencer renamed to external service 
Form type in form_definition table changed to 'external service info form' from 'sequencer info form'
The sequencer tag in the external_services xml changed to external_service.
'do_not_encode' option removed from the build_select_field utility method in form_builder
 2011-01-10 14:06:10 -05:00
Ramkrishna Chakrabarty 77c6f3ea06 FIxed the unwanted changes made in the previous commit 2011-01-07 16:19:59 -05:00
Ramkrishna Chakrabarty f7a35e13cb Renamed sequencer to external_service and sequencer_type to external_service_type. 
Added table to associate external services to a request type.
Enhanced UI to support selection of multiple external services for a request type.
 2011-01-07 16:12:36 -05:00