 Jeremy Goecks
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324a69d64e
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Trackster: when creating a visualization, default the view to the first chromosome.
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2012-12-11 16:47:54 -05:00 |
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Jeremy Goecks
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113887f457
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Trackster: use tile region in place of tile index for simplicity.
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2012-12-10 16:08:44 -05:00 |
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Jeremy Goecks
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ab88d9c87d
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Trackster: use underscore methods to simplify tile search/iteration and remove old debugging statement.
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2012-12-10 15:47:05 -05:00 |
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Jeremy Goecks
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a59aab8936
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Trackster: remove unused var.
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2012-12-10 15:38:57 -05:00 |
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Jeremy Goecks
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7d30dcfaa1
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Trackster: do not use width parameter in draw helper because it's not needed anymore.
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2012-12-10 15:31:38 -05:00 |
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Carl Eberhard
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9664fa077a
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pack_scripts
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2012-12-07 14:36:44 -05:00 |
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Carl Eberhard
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fc078023b7
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ui.js: fix to bad template reference
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2012-12-07 14:13:25 -05:00 |
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Carl Eberhard
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7a409d6ef0
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clean up; pack
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2012-12-07 14:00:51 -05:00 |
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Carl Eberhard
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b52e6d4113
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ui: adding PopupMenu view as alternate to make_popup_menu and allow changing option text, adding/removing options, and adding checkmarks for togglable options; index.mako: use PopupMenu for history-options-button; history panel: use alternate_history.mako to add 'collapse all', 'Include hidden datasets'(toggle), 'Include deleted datasets'(toggle) to history-options-button; alternate_history.mako: include better system for debugging js when changing source directly is problematic (main/test); pack_scripts;
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2012-12-07 13:56:53 -05:00 |
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Carl Eberhard
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7d79c06925
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history panel: fix to trackster links when dbkey is empty; pack_scripts
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2012-12-06 17:34:18 -05:00 |
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Carl Eberhard
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feddd2bf9f
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history panel: fix download popup for uploaded files with meta files (bam) by moving url rendering from initialize to render; pack scripts
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2012-12-06 16:33:18 -05:00 |
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Carl Eberhard
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1314981bb7
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base/_panels.mako: IE console protection; history panel: move hda updater into history-model (from HDACollection), handle new hdas more gracefully, handle hidden hdas that move into the ready states.
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2012-12-04 14:43:49 -05:00 |
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Carl Eberhard
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50bf56a5d4
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history panel: comment out console statements; controllers/visualization: remove non-2.5 compliant 'with' statement
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2012-11-29 17:43:15 -05:00 |
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Carl Eberhard
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58ee5ce033
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LazyDataLoader.js: now handles NaN/Infinity/-Infinity as null, allows overriding jQuery's datatype converters; controllers/root: added echo_json for debugging/testing
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2012-11-29 13:32:44 -05:00 |
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Carl Eberhard
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14d09d9dec
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scatterplot: add header discovery from first dataset line; fix animation; better hover info; fix column selection; pack scripts
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2012-11-28 10:45:01 -05:00 |
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Carl Eberhard
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0a65b4947a
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scatterplot: renaming/re-organization pass; layout change to vertical tabs and inclusion of chart under tabs; pack scripts
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2012-11-27 11:19:32 -05:00 |
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Carl Eberhard
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db858dea29
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history panel: documenting fix to show display and edit attributes buttons for HDA in the error state.
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2012-11-21 14:02:58 -05:00 |
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Carl Eberhard
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96a72cda1c
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history panel: moved refresh into 'History' header bar. Moved 'Collapse Expanded Datasets', 'Show/Hide Deleted Datasets', and 'Show/Hide Hidden Datasets' into 'History' gear menu. Removed gear menu from current history. Packed scripts.
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2012-11-21 13:28:33 -05:00 |
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Carl Eberhard
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d64a1a870f
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scatterplot: fix column selection broken in 7002f41
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2012-11-20 15:42:01 -05:00 |
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Carl Eberhard
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d48bbd4b45
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pack scripts
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2012-11-20 15:32:40 -05:00 |
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Carl Eberhard
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3b30433bf6
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scatterplot: clean up
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2012-11-20 15:32:14 -05:00 |
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Carl Eberhard
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a9872520c9
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scatterplot: add ability to auto-render based on query string
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2012-11-20 15:30:22 -05:00 |
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Carl Eberhard
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ce007f07f7
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history panel: noop on ajax error fetching history updates when interrupted by iframe refresh.
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2012-11-19 12:18:10 -05:00 |
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Dannon Baker
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a270da52fe
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Packed scripts.
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2012-11-16 09:42:05 -05:00 |
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Dannon Baker
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0808d4ff75
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Add paused dataset state for new history panel. Still needs icon and complete info text.
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2012-11-16 09:40:20 -05:00 |
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Carl Eberhard
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cf01e9ef7b
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history panel: fix to packed template name
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2012-11-15 13:43:54 -05:00 |
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Carl Eberhard
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6c86d20d5c
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pack scripts
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2012-11-15 13:11:56 -05:00 |
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Carl Eberhard
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31181c10a4
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history panel: fix to template name
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2012-11-15 13:11:21 -05:00 |
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Carl Eberhard
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3ab5d2b1ea
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tool_runner.py, rerun: allow encoded ids; history panel: move refresh out of popup, rearrange icons.
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2012-11-15 13:08:57 -05:00 |
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Carl Eberhard
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0f78b5ccb6
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pack scripts
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2012-11-15 12:04:17 -05:00 |
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Carl Eberhard
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f25ed916f7
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Enabling client side history panel
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2012-11-15 12:03:38 -05:00 |
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Carl Eberhard
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8d1cab3775
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pack scripts
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2012-11-15 11:25:58 -05:00 |
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Carl Eberhard
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54be234227
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static/scripts/mvc: jsDocs on all. I've used jsdoc-toolkit via node with success on these; the Rhino version should work also.
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2012-11-15 11:25:18 -05:00 |
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Jeremy Goecks
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9ff2eaee0f
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Small bug fixes for Circster.
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2012-11-14 18:50:20 -05:00 |
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Carl Eberhard
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9d95495bde
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(alt)history: subclass on for_editing flag: now hda-edit.js, hda-base.js; split hda and history templates; compile_templates.py: don't stop removal loop for error on single file; pack_scripts;
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2012-11-09 15:38:51 -05:00 |
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Carl Eberhard
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f0cdf264bc
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(alt)history: standardize custom broadcasted events, localize all strings; base-mvc, GalaxyLocalization: add (commented-out) code to store non-localized strings that are attempting to be localized; pack scripts;
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2012-11-09 11:01:48 -05:00 |
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Carl Eberhard
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b06a75beee
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pack scripts
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2012-11-08 16:15:03 -05:00 |
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Carl Eberhard
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44faa234bb
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api/histories, show: state_ids now returns all ids (incl. deleted hdas); (alt)history: minor changes
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2012-11-08 16:14:15 -05:00 |
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Carl Eberhard
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5729893c57
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pack scripts
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2012-11-08 14:43:26 -05:00 |
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Carl Eberhard
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7b8c252e4d
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(alt)history: move show_deleted, show_hidden to the client. galaxy.util: added string_as_bool_or_none which parses True/False/None values from controller args.
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2012-11-08 14:42:26 -05:00 |
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Jeremy Goecks
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ce25ef8a4f
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Circster: do not transition labels if there are no data bounds (and hence nothing to transition).
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2012-11-07 10:16:07 -08:00 |
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Carl Eberhard
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b8fb01b2cc
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(alt)history: split files up, rework names, add global Galaxy namespace
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2012-11-06 15:54:47 -05:00 |
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Carl Eberhard
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48d58a8e58
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pack scripts
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2012-11-06 14:09:40 -05:00 |
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Carl Eberhard
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88ec8035d1
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quota meter: fix multiple api calls on first history render; controllers/root.py: set up to move show_deleted/hidden into client
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2012-11-06 14:07:21 -05:00 |
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Jeremy Goecks
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a6fd79c548
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Circster improvements: (a) fetch a smaller amount of data on load and (b) use large quantile rather than max for top data range to limit impact of exceptionally large values.
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2012-11-06 09:52:23 -05:00 |
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Carl Eberhard
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b9741f77df
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(alt)history: incorporate quota meter; bugifxes
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2012-11-05 16:59:20 -05:00 |
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Carl Eberhard
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2b2bc12005
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added user backbone model; added quota meter view on user model
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2012-11-05 16:56:28 -05:00 |
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Jeremy Goecks
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aa2d69a4e3
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Pack scripts.
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2012-11-04 21:44:29 -05:00 |
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Jeremy Goecks
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2ee25fa5d3
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When running tools in Trackster, use Region object.
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2012-11-04 19:26:33 -05:00 |
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Jeremy Goecks
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7a0ce2c94f
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Transition track labels when adding/removing tracks.
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2012-11-04 14:49:46 -05:00 |
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