Nuwan Goonasekera
4a7708b7e0
Fix wording for pod retries while maintaining backward compatibility
2019-06-03 14:36:44 +05:30
Aysam Guerler
a763c89180
Merge pull request #8035 from martenson/changesets-search-index
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enhance TS repo search capabilities
2019-05-30 23:25:14 -04:00
Nate Coraor
51b39b82e6
Merge remote-tracking branch 'upstream/release_19.05' into dev
2019-05-30 15:03:50 -04:00
Nate Coraor
bff203f48c
Merge remote-tracking branch 'upstream/release_19.01' into release_19.05
2019-05-30 15:03:00 -04:00
Nate Coraor
dfb591caf6
Document the handler max_grab config param
2019-05-30 09:18:42 -04:00
Martin Cech
676d913c05
add option to specify category boost for searching repos
2019-05-29 16:20:33 -04:00
Will Simpson
738579e432
Refactor comments in sample object stores to remove nested comments.
2019-05-21 14:31:51 -07:00
Björn Grüning
b8f9d9a75c
Merge pull request #7993 from msauria/mcooler
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Add mcool datatypeand extend h5 tool output testing
2019-05-18 10:11:37 +02:00
Nicola Soranzo
75d9e33363
Merge branch 'release_19.05' into dev
2019-05-17 10:10:16 +01:00
Andreas Skorczyk
a213c06c5f
Fixed wrong example for amqp_ack_republish_time
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"amqp_republish_time" should be "amqp_ack_republish_time "
2019-05-16 12:08:24 +02:00
James Taylor
610b7678da
cellxgene GIE: use API to get datasets.
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No longer requires volume mounts, so useable on main. Also updates to
latest version of cellxgene in container.
2019-05-13 14:25:51 -04:00
Nicola Soranzo
c82749688e
Merge branch 'release_19.05' into dev
2019-05-11 14:05:55 +01:00
msauria
2d0f67ac6b
Added multi-resolution cooler (mcool) datatype
2019-05-10 17:06:00 -04:00
Marius van den Beek
99a86eaf10
Merge pull request #7917 from dannon/release_static_fixes
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[19.05] Interactive Environment Fixes
2019-05-10 21:52:55 +02:00
Dannon Baker
349ac80412
Include suggestion from Marius to make port specification more clear.
2019-05-10 10:12:27 -04:00
Dannon Baker
a1487d733a
Fix a few more random typos in config, rebuild
2019-05-10 10:09:10 -04:00
Dannon Baker
6bc802307f
Document the modern docker networking special DNS 'host.docker.internal' for use with GIES. Fix another typo I saw.
2019-05-10 10:04:12 -04:00
Dannon Baker
c7bc50f6d1
Drop redundant GET (test_ie_avail already does this to check for access) for RStudio custom js
2019-05-09 14:24:19 -04:00
Helena Rasche
9ec128c35d
fix image location
2019-05-09 15:34:12 +02:00
Dannon Baker
c90642d969
Cleanup in IE javascript.
2019-05-08 12:43:21 -04:00
Dannon Baker
be30834d90
Add bridge for Toast/toastr for use by IE plugins
2019-05-08 12:32:01 -04:00
Dannon Baker
e391f241cd
Swap all IES to require-less loading.
2019-05-08 11:49:00 -04:00
Dannon Baker
bc2a84a4dd
Swap jupyter to require-free loading.
2019-05-08 11:40:05 -04:00
Dannon Baker
fd75ce5e43
Standardize (at least a step forward) access to IES lib via bundle
2019-05-08 10:59:34 -04:00
Dannon Baker
418edbd8f4
Move IEs to a standard 'main.js' instead of <named>
2019-05-08 10:51:30 -04:00
Dannon Baker
38c2a80904
Update IES to use bundleEntries-based JS entrypoint to avoid having to ship an extra file; incremental step towards removing require here, too.
2019-05-07 16:44:15 -04:00
Dannon Baker
79d73cefd0
Use primary (likely cached) libs here instead of direct access.
2019-05-07 11:36:08 -04:00
John Chilton
f81c41895b
Allow YAML configuration of job_conf.xml.
2019-05-07 08:23:30 -04:00
M Bernt
b92ba631d3
added dada2 datatypes
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- as proxies to tabular or Rdata
- helps to connect the dada2 tools (https://github.com/bernt-matthias/mb-galaxy-tools/tree/topic/dada2 )
2019-05-06 22:22:30 +02:00
John Chilton
59331a1606
Unit test case for <container> tags in job_config.
2019-05-03 11:01:18 -04:00
John Chilton
a8734f5cb4
Improvements to structure of docs in job_conf advanced sample.
2019-05-03 11:01:18 -04:00
John Chilton
72919beba0
Small no-op bug in job_conf.xml.sample_advanced.
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This does nothing - probably that was supposed to be on <destination>. xref #2492
2019-05-03 11:01:18 -04:00
John Chilton
66abdb0ac7
Fix tabs to spaces in job_conf.xml.sample_advanced.
2019-05-03 11:01:18 -04:00
Dannon Baker
8b0bbba1a7
Merge remote-tracking branch 'upstream/release_19.05' into dev
2019-05-02 11:20:39 -04:00
Helena Rasche
c545aaf4d4
[19.05] Add shapefile datatype ( #7819 )
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[19.05] Add shapefile datatype
2019-05-02 10:18:40 +02:00
Dannon Baker
47e80ba630
Merge remote-tracking branch 'upstream/release_19.05' into dev
2019-05-01 11:04:12 -04:00
Dannon Baker
7677dbdc1c
Fix comment starttag in oidc sample
2019-05-01 09:11:21 -04:00
Dannon Baker
ef0cfb5b2a
Merge remote-tracking branch 'upstream/release_19.05' into dev
2019-05-01 08:57:22 -04:00
Kidane M. Tekle
14628e1fe7
added elixir oidc backend, python soical auth version upgraded
2019-04-30 19:21:19 +02:00
Nicola Soranzo
ce85dbc906
Add ELIXIR OIDC backend, upgrade social-auth-core requirement version ( #7852 )
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Add ELIXIR OIDC backend, upgrade social-auth-core requirement version
2019-04-30 15:10:32 +01:00
Kidane M. Tekle
79a5ade5cb
updated documentation link
2019-04-30 10:40:51 +02:00
Kidane M. Tekle
5723e15cce
added elixir oidc backend, python soical auth version upgraded
2019-04-29 08:25:18 +02:00
Sergey Golitsynskiy
158fb6b454
Update config_schema + run make config-rebuild
2019-04-27 01:19:57 -04:00
Nicola Soranzo and ic4f
cf6ab64a89
Update config/galaxy.yml.sample
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Co-Authored-By: ic4f <sgolitsynskiy@gmail.com >
2019-04-26 19:51:06 -04:00
Bjoern Gruening
89996dcd93
remove redundant datatype def
2019-04-26 22:34:20 +02:00
Sergey Golitsynskiy
06f5cfa562
Add option to wait for db to become available
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Configurable option to wait for the database to become available instead
of failing immediately.
_configure_models() seems to be the earliest/reasonable place for it.
2019-04-25 20:35:49 -04:00
John Chilton
2589d4d394
Merge pull request #7796 from mvdbeek/param_parser_tool
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Add general purpose expression tool
2019-04-23 16:20:39 -04:00
mvdbeek
f444b03b90
Add a expression tool that creates parameters from input file
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This tool allows parsing text, integer, float and boolean parameters
from a input dataset.
This closes #7774
2019-04-23 12:11:16 +02:00
Bjoern Gruening
c8661adc4a
foo
2019-04-22 00:54:48 +02:00
Bjoern Gruening
a48e61e994
add GeoJSON datatype
2019-04-19 14:11:19 +02:00
Nuwan Goonasekera