Marius van den Beek
550f47db9e
Merge pull request #13540 from mvdbeek/dev
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Merge release_22.01 into dev
2022-03-15 11:30:18 +01:00
Björn Grüning
5d958bc1ec
Merge pull request #13535 from hexylena/gtn-webhook-autoload
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Enable automatically loading webhook based on url
2022-03-14 21:31:24 +01:00
mvdbeek
faea1c8211
Merge branch 'release_22.01' into dev
2022-03-14 17:06:49 +01:00
Nicola Soranzo
0c80836c34
Upgrade syntax to Python 3.7
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using `ack --type=python -f | grep -v '^tools/' | xargs pyupgrade --py37-plus`
Also more refactoring of Python files in `packages/` .
2022-03-14 14:57:43 +00:00
Helena Rasche
c7a17a5837
Enable automatically loading webhook based on url
2022-03-14 12:33:23 +01:00
Dannon Baker
c14910231c
Fix jqplot_bar import (this was causing a build failure -- was this originally built on a case insensitive system maybe?)
2022-03-07 12:08:34 -05:00
Nicola Soranzo
a62e86fc2e
Merge branch 'release_22.01' into dev
2022-03-04 17:02:22 +00:00
mvdbeek
ed8ce47c42
Claify galaxy_infrastructure_url / IT container relationship
2022-03-03 10:56:27 +01:00
Marius van den Beek and Nicola Soranzo
94c994f95c
Fix spelling and grammar in IT instructions
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2022-03-02 19:07:36 +01:00
mvdbeek
3a28fb07da
Update IT documentation
2022-03-02 14:15:46 +01:00
Dannon Baker
623a5e165a
Apply black formatting.
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Apply isort.
2022-02-03 07:42:20 -05:00
Reid Wagner
71eb4eb65d
Update version number.
2022-01-28 13:40:55 -06:00
Reid Wagner
0b538342a0
Store peptide IDs as strings.
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These peptide IDs were previously parsed as floats. The result was that
peptides that were too large were rounded, and the ID was no longer
meaningful, resulting in the "PSM Detail for Selected Peptides" table
not being populated.
With this change PEPTIDE_ID field is no longer parsed as a float, and
remains a string.
2022-01-28 13:40:45 -06:00
Nate Coraor
c9cf15576c
Move gunicorn to regular requirements (not just dev) and add uvloop.
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Swap circusd for gravity to start dev-mode/run.sh Galaxy.
2022-01-21 13:29:14 -05:00
Dannon Baker
28deb88dd6
Fix routing for tool execution from gtn webhook
2022-01-06 13:13:03 -05:00
Marius van den Beek
f57730093c
Merge pull request #13118 from dannon/news-gtn-hooks-safety
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Webhooks robustification for news and gtn
2022-01-06 17:26:40 +01:00
Dannon Baker
c6bcea5a8c
For gtn/news frames, ensure frame is engaged prior to dismissal.
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Guarding here is simpler than tracking event handlers and making
assumptions.
2022-01-05 08:49:55 -05:00
mvdbeek
a677623df3
Fix tour builder for instances with prefix
2022-01-05 13:31:58 +01:00
Dannon Baker
b9505426e2
Wrap default webhooks in iifes to prevent global pollution
2022-01-04 22:29:17 -05:00
Dannon Baker
0949d3e01a
Delay iframe creation for news until it's actually clicked
2022-01-04 14:21:54 -05:00
davelopez
c0134f97d6
Fix broken library datasets links
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- Some links to library elements were not replaced with the new library router paths.
- Fix undeleted dataset link in toast message.
2021-12-13 13:46:19 +01:00
guerler
43e80d1fcf
Use utilities npm package, remove utilities, fix visualizations
2021-11-13 22:20:07 -05:00
guerler
0658c1607e
Declare asBoolean as module function in nvd3
2021-11-05 20:03:46 -04:00
guerler
7358c85783
Allow visualization to process either legacy string based booleans and true booleans
2021-11-01 00:54:08 -04:00
mvdbeek
497f6a9835
Merge branch 'release_21.09' into dev
2021-10-26 16:30:19 +02:00
mvdbeek
4262610b71
Merge branch 'release_21.05' into release_21.09
2021-10-26 16:29:37 +02:00
Dannon Baker
c8d6d39c5a
Manually hack the built static, too -- this needs followup in dev to be clean and remove artifacts
2021-10-26 08:42:08 -04:00
Dannon Baker
c220f6d55a
The surgical in-place fix to prebuilt msa.js to account for 'at' being in array now in ff/chrome
2021-10-26 08:42:08 -04:00
Oleg Zharkov
bf78a3d2b5
Merge branch 'dev' into webpack5
2021-10-06 20:44:01 +02:00
Helena Rasche
a5a90a1a59
fix branch for release notes
2021-10-01 14:37:21 +02:00
Dannon Baker
bb6be48540
Drop the 'downgrade' now that 21.09 is frozen (will mer
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ge prerelease notes along with this)
2021-09-28 08:03:01 -04:00
Dannon Baker
fe3d2fbafd
Merge remote-tracking branch 'upstream/dev' into webpack5
2021-09-22 09:18:14 -04:00
Dannon Baker
7925d5f8c0
Adjust welcome build location to standard dist, drop artifacts
2021-09-16 23:27:44 -04:00
Dannon Baker
a14c82ad00
Swap to @galaxyproject namespace on npm
2021-09-16 23:27:40 -04:00
Alexander OSTROVSKY
24f13618c3
remove image files
2021-09-16 23:23:03 -04:00
Alexander OSTROVSKY
9b9f379265
New User Welcome page
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make runnable from pr. Still need to debug
divs out
tree
broken into components
cleaning
formatting, file names, jest tests
jest
removed image files, will be retrieved via npm or separate repo
update
plugin via webpack
webpack plugin
change to plugin to prevent repeated image downloading
update
add actual page accessible from help and registration
Full draft
jest fix, next to make package customizeable
yarn lock
fix
update
Update
Refactor from here for the confiuration stuff -- this displays the bundle
drop plugin_build_hash -- these should never be committed
Update plugin gitignore
Oops, left in a debug
2021-09-16 23:22:57 -04:00
Sergey Golitsynskiy
c068d3319f
Drop sylink to tool_conf.xml.main
2021-09-13 14:58:51 -04:00
Helena Rasche
f805b0dd17
Add future runway
2021-09-08 17:27:05 +02:00
Helena Rasche
36782f9b9d
Downgrade 21.09 to 05, temporarily
2021-09-08 17:12:57 +02:00
Dannon Baker
5c78a79123
Had my comments backwards, simplify selector
2021-09-02 08:52:06 -04:00
Dannon Baker
33c64034dc
Cleanup
2021-09-02 08:19:43 -04:00
Dannon Baker
b5b4af7a24
Use fontawesome-regular to show no notifications
2021-09-02 08:18:37 -04:00
Helena Rasche
b02cbdfad9
Implement news webhook to handle release announcements
2021-09-01 15:56:52 +02:00
Dannon Baker
2ade88fabe
Merge remote-tracking branch 'upstream/dev' into webpack5
2021-08-20 09:03:51 -04:00
guerler
b8c5c56d07
Fix tour based selenium test for core galaxy ui
2021-08-10 14:31:13 -04:00
guerler
ea10fbe89b
Make colors optional in nvd3 visualizations
2021-08-02 10:38:42 -04:00
Dannon Baker
7586efd98a
Update remaining templates to new bundle entrypoints
2021-07-27 08:55:55 -04:00
Nicola Soranzo
9c08ecc258
Replace fa-refresh icon with fa-redo for job re-run buttons
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to distinguish it from the sync button we use e.g. to refresh the history.
2021-06-15 23:23:01 +01:00
Nate Coraor
2ddc310711
Update dependency resolver docs and drop sample XML file in favor of
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direct configuration under the dependency_resolvers key of galaxy.yml.
2021-06-07 18:16:07 -04:00
mvdbeek
3d59717142
Add celery setup that regularly cleans audit_table
2021-05-11 18:34:30 +02:00
Marius van den Beek