Commit Graph
129 Commits
Author SHA1 Message Date
mvdbeek fd51314a88 Drop more uWSGI legacy things 2022-03-15 21:32:00 +01:00
Nicola Soranzo 318a1d7056 Fix make diff-format
- The path is required
- The target revision may be a release branch, so use the default
  (i.e. last commit)
- Run `isort` in addition to `black`.
2022-02-17 10:23:42 +00:00
DannonandNicola Soranzo 34de0307a6 Apply suggestions from code review
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
2022-02-03 08:53:23 -05:00
DannonandNicola Soranzo ff2f3600f4 Update Makefile
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
2022-02-03 07:39:47 -05:00
Dannon Baker c6d250516e Add simple make target for formatting everything (non-diff) 2022-02-03 07:39:47 -05:00
mvdbeek 0af72e56b2 Update version to 22.05.dev0 2022-02-01 11:10:56 +01:00
Michael R. Crusoe 724d983d46 Add "diff-format" Makefile target
Re-format code changed since the last Git commit using "black" via
darker
2021-12-09 15:52:32 +00:00
Nicola Soranzo 7630ed5427 Fix clean-cwl-conformance-tests missing from make menu 2021-12-02 16:11:23 +00:00
John Chilton 9a586a58b9 Add CWL conformance API tests
1) Download conformance tests to `test/functional/tools/cwl_tools` where
  they can be used also by framework and unit tests in the future.
2) Add populators to enable executing CWL conformance tests
3) Generate CWL conformance API tests only when needed for tests
2021-11-23 14:10:21 +00:00
Dannon Baker fe3d2fbafd Merge remote-tracking branch 'upstream/dev' into webpack5 2021-09-22 09:18:14 -04:00
mvdbeek 5332eb246a Update version to 22.01.dev0 2021-09-20 19:53:11 +02:00
Dannon Baker 71366ddc72 Fix webpack dev server for v5 2021-07-26 22:00:39 -04:00
mvdbeek fdb36c7ed7 Run client-y tests with --frozen-lockfile
Seems to be best-practice and may be a little faster
2021-06-30 13:06:24 +02:00
mvdbeek 07fb59937e Update version to 21.09.dev0 2021-05-05 21:48:01 +02:00
Nate Coraor cc1f471490 Release process overhaul
- Convert release Makefile targets to a script
- Update package versions from Galaxy version instead of leaving them
  uncoupled
- Use next-dev-version process on release branches when in between point
  releases
- Automatically detect and increment versions
- Test merging release branches forward before pushing releases
- Support multiple rc versions (will be more useful for package testing)
- Support building local versions of packages
- Tests for the release script
2021-03-30 12:11:48 -04:00
Björn Grüning 6f7e8c4296 Merge pull request #11177 from jmchilton/jupyter_selenium_0
Documentation and helpers for using galaxy-selenium package within Jupyter
2021-01-22 11:41:36 +01:00
Nicola Soranzo 70def633f1 Replace pipenv with poetry. Update all dependencies 2021-01-21 20:30:00 +00:00
John Chilton 5661e0db9f Exploratory Jupyter environment for `galaxy-selenium`.
The new Makefile-based command ``make serve-selenium-notebooks`` will serve notebooks in lib/galaxy_test/selenium/jupyter.

The notebooks will target a Galaxy host running on port 8080 - but are parameterized to be run with papermill (https://papermill.readthedocs.io/) for automate targeting different Galaxy servers, remote Selenium servers, etc..

Screenshots will be embedded right into the notebook.

Example notebooks setup to target just the library code in ``galaxy-selenium`` as well as one appropriate to leverage the Galaxy testing framework are included and documented in depth via modules docstring for ``galaxy_test.selenium.jupyter``.
2021-01-18 17:24:28 -05:00
John Chilton 45ed317832 Rework docs to -W more aggressively but also provide a development Makefile target.
Development target uses 4 cores (I use 8 locally), shows all warnings about issues (instead of failing on first), and skips the viewcode step which isn't parallelized and doesn't really exercise anything the developer has useful control over or would need to see during doc tweaking.
2021-01-12 09:34:28 -05:00
John Chilton 386470789f A couple new ways to speed up doc building locally. 2021-01-12 09:29:53 -05:00
Dannon Baker b9a4042d0b Update makefile target, verbiage for jest. 2020-12-14 07:48:01 -05:00
Dannon Baker 682e8ae764 Rename targets and env var to be more clear 2019-11-21 16:57:23 -05:00
Dannon Baker c3a88e32e5 Add make target for starting webpack dev server 2019-11-21 16:38:58 -05:00
Nicola Soranzo 2c5882d4f5 Fix client formatting
List `client-lint` instead of `client-eslint` when running `make` with
no target.
2019-09-30 22:12:00 +01:00
John Chilton c30b92517d Switch client formatting check to be part of linting. 2019-09-18 13:27:30 -04:00
Sergey Golitsynskiy fb98cf3585 Move config_manage out of webapps/ into config/
First pass.
2019-08-22 15:46:08 -04:00
Dannon Baker b8d6338334 Swap to docker-based dependency updating by default, for consistency across platforms. 2019-04-15 12:38:47 -04:00
Dannon Baker 448dd08fba Add makefile targets for building the dependency docker container and then using it. 2019-04-15 12:28:33 -04:00
Nicola Soranzo 5fcc230eca Makefile: run bootstrap_history.py inside the VENV
Prevent error messages when `requests` or `six` are not available, e.g.:

```
$ make
Traceback (most recent call last):
  File "scripts/bootstrap_history.py", line 658, in <module>
    main(sys.argv)
  File "scripts/bootstrap_history.py", line 419, in main
    raise Exception("Requests library not found, please pip install requests")
Exception: Requests library not found, please pip install requests
client-eslint                  Run client linting
client-format                  Reformat client code
...
```
2019-03-22 17:29:49 +00:00
Nate Coraor ef8f208002 Merge remote-tracking branch 'upstream/release_19.01' into dev 2019-02-22 13:24:15 -05:00
Dannon Baker 726ad9a0f6 Bump yarn's network timeout from 2 minutes to 5 minutes. 2019-02-21 11:48:11 -05:00
Nicola Soranzo e97634739d Build tool XML schema docs using `sphinx_markdown_tables`
instead of converting the Markdown to reStructuredText with pandoc.

Fix the broken tables, but code inside tables is not coloured as
in the rest of the document.
2019-02-06 17:27:48 +00:00
Dannon Baker 9ddcba91be Drop internal client-test-* makefile targets 2019-01-16 09:09:11 -05:00
Dannon Baker 61774f5126 re-enable full matrix, overhaul qunit/lint implementations. 2019-01-15 20:34:48 -05:00
Dannon Baker f95cff627b Attempt to add eslint to travis. 2019-01-15 16:43:29 -05:00
Mason b637c7575a Modified test script calls 2018-11-01 20:15:56 -07:00
Nicola Soranzo 00632a5295 Fix `expr: non-integer argument error when running make`
when `VERSION_MINOR` in `lib/galaxy/version.py` is e.g. `rc1`.

Also:
- Do not require awk
- Remove unused functions
- Do not require the presence of `~/.github.json` file
2018-10-24 01:03:57 +01:00
John Chilton 1b90d89814 Mocha based client unit testing of rule tests. 2018-04-13 12:21:29 -04:00
Dannon Baker fefd686b29 Increase yarn's network timeout 2018-04-09 15:10:40 -04:00
Nicola Soranzo c9881fdc5c Merge branch 'release_18.01' into dev 2018-04-03 10:54:48 +01:00
Dannon Baker 4d742c3b13 Clarify make targets, update client/README 2018-03-28 10:28:54 -04:00
Dannon Baker 8330bbfe99 Drop old charts building from makefile/package scripts -- this is no longer necessary and charts are individually packed. 2018-03-20 11:50:01 -04:00
Dannon Baker e13740a3f6 Drop short-lived 'make client-production' warning from build scripts, since we're not including these moving forward. 2018-02-12 13:39:08 -05:00
Nicola Soranzo 6f2a0cceb0 Unify config-rebuild Makefile targets
Rebuild reports sample and RST from schema with the new Makefile target.
2018-02-08 10:16:58 -05:00
Nate Coraor 44c291bc66 Merge remote-tracking branch 'origin/dev' into ini_to_yaml_config 2018-01-18 12:30:05 -05:00
Dannon Baker 57090c0e73 Ugh, yern->yarn (was using yern to test the failure of the command, left in this debug switch...) 2018-01-03 17:39:04 -05:00
Dannon Baker a3b575644c Add extra help output in Makefile for when Yarn isn't found. 2018-01-03 17:36:24 -05:00
John Chilton 8a9dc5907d yaml_config - Add entry points (e.g. Makefile) for dealing with Galaxy YAML configs. 2017-12-06 20:28:20 -05:00
Dannon Baker 1c30a850af Add a better client commit warning to the Makefile. 2017-11-29 13:57:33 -05:00
Dannon Baker 9626350168 Makefile targets, and somehow we had a gruntfile map in the repo from ancient times. 2017-11-29 13:04:25 -05:00