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2db95b4d1dd8c72fbf20439ac473d8a2b15f5c1a
Commit Graph
487 Commits
Author SHA1 Message Date
John Chilton 2db95b4d1d Rename datatype extension 'bam_native' to 'unsorted.bam'. 
We handle other bam types this way and other more specific variants of an extension (e.g. thermo.raw) so this feels like the more consistent thing to do.
 2018-03-12 12:29:57 -04:00
Martin Cech df03a59c53 move some sections deeper in the document 
to make the highlights more focused
 2018-03-09 16:57:08 -05:00
Nicola Soranzo c5ead795b5 Add #5643 to release notes 2018-03-09 12:22:59 +00:00
Nicola Soranzo 235d6c3269 Condense some entries 2018-03-09 11:58:27 +00:00
Nicola Soranzo 804f815eee Fix bullet list indentation 2018-03-09 11:43:28 +00:00
Nicola Soranzo e68ac4a3c8 Highlights fixes 2018-03-09 11:39:04 +00:00
John Chilton 9e274278f1 Small language tweaks. 
Including fixes from :eagle:👀.
 2018-03-08 22:33:21 -05:00
John Chilton 6d4b83990f Spell check 18.01 release notes and small tweaks. 2018-03-08 22:30:46 -05:00
John Chilton b964722acc More release 18.01 release note tweaks. 2018-03-08 22:20:23 -05:00
John Chilton 1923786a65 Condense many 18.01 release bullets, expand a few - part 3 of 1003. 2018-03-08 22:02:06 -05:00
John Chilton 1a68096cfa Condense many 18.01 release bullets, expand a few - part 2 of 1003. 2018-03-08 20:53:24 -05:00
John Chilton cb477ddcf0 Condense many 18.01 release bullets, expand a few. 2018-03-08 20:35:24 -05:00
John Chilton e923c61a07 More progress on release notes, still very rough. 2018-03-08 20:24:43 -05:00
John Chilton 3515d60405 Another couple sentences of release docs. 2018-03-08 17:29:48 -05:00
John Chilton 02bf18f33b Some initial work on release highlights, still completely broken. 2018-03-08 17:07:17 -05:00
Martin Cech 63292de10a add trackster fix to RN 2018-03-08 15:56:04 -05:00
Martin Cech 0229bf5329 announce removal of planttribe datatypes 2018-03-08 14:41:02 -05:00
Martin Cech 9c9c69ca29 iniital work on RN 2018-03-08 14:07:51 -05:00
Martin Cech f24043e8a7 Merge pull request #5441 from natefoo/framework-dependencies-doc-update-18.01 
[18.01] Admin doc corrections
 2018-02-01 16:38:50 -05:00
Nate Coraor 6d8edce331 Admin doc corrections 2018-02-01 16:25:12 -05:00
Martin Cech ffaabe0a63 Merge pull request #5342 from dannon/integration.webhooks_improvements 
[18.01] Webhooks improvements
 2018-02-01 15:14:47 -05:00
Martin Cech a37b638491 Merge pull request #5390 from natefoo/framework-dependencies-doc-update 
[18.01] Update framework dependencies documentation
 2018-02-01 15:00:15 -05:00
Evgeny Anatskiy 29c766167a update webhooks docs 2018-02-01 12:22:21 -05:00
Nicola Soranzo 5b23c0e87d Merge branch 'release_17.09' into release_18.01 
Conflicts:
	client/galaxy/scripts/mvc/workflow/workflow-node.js
	config/galaxy.ini.sample
	static/maps/mvc/workflow/workflow-node.js.map
	static/scripts/mvc/workflow/workflow-node.js
 2018-01-31 10:38:53 +00:00
Nicola Soranzo c0c95548a3 Merge branch 'release_17.05' into release_17.09 2018-01-31 10:16:33 +00:00
mvdbeek a70f2875b3 Remove r channel from more locations 2018-01-29 18:07:29 +01:00
Nate Coraor 6333e83a65 Doc corrections from @nsoranzo 2018-01-26 10:18:53 -05:00
Nate Coraor fd96864bd6 Finish updates to framework dependencies doc 2018-01-25 12:36:11 -05:00
Nate Coraor 6bdd755aaf WIP framework dependencies doc update 2018-01-25 12:36:11 -05:00
Nate Coraor ebafd19575 Merge pull request #5138 from scholtalbers/feature/auto_create_userfolder 
Add option to auto create user_library_import_dir directories upon user login
 2018-01-22 11:27:19 -05:00
Nate Coraor dea3b73dd2 Merge remote-tracking branch 'origin/dev' into feature/populate_ldap_user 2018-01-19 11:45:33 -05:00
Nate Coraor ea7dbd1906 Merge remote-tracking branch 'origin/dev' into feature/auto_create_userfolder 2018-01-19 11:39:30 -05:00
Nate Coraor 3fdbaa3dec Regenerate galaxy.yml.sample and documentation for newly 
added/documented config options.
 2018-01-18 12:31:41 -05:00
Nate Coraor 44c291bc66 Merge remote-tracking branch 'origin/dev' into ini_to_yaml_config 2018-01-18 12:30:05 -05:00
Nate Coraor efb061d4d4 Add a tiny bit about uwsgitop 2018-01-12 16:51:37 -05:00
Nate Coraor 5fcefe404f Attempt to reduce duplication in the proxy documentation through the use 
of includes, move the multi-config-file discussion to a common page.
 2018-01-12 16:44:40 -05:00
Nate Coraor f4131b8d2b Correct doc typos caught by @nsoranzo 2018-01-12 10:45:50 -05:00
Nate Coraor 78992968ec Correct documentation line endings 2018-01-11 16:40:05 -05:00
Nate Coraor 5a0d60537c Update Apache documentation for uWSGI 2018-01-11 16:38:48 -05:00
Nate Coraor 1b583fb851 Update nginx documentation for uWSGI 2018-01-11 13:56:23 -05:00
Nate Coraor 35b1e2c9e7 Correct the handlers section of the job conf documentation. 2018-01-10 16:47:09 -05:00
Nate Coraor 1e275e84f8 Add loggging configuration to admin docs TOC and move the cluster docs 
after the scaling docs
 2018-01-10 16:28:00 -05:00
Nate Coraor db00f97175 Finish Galaxy logging configuration documentation 2018-01-10 16:26:09 -05:00
Nate Coraor e0891cac35 Add intersphinx mapping to the Python 2.7 documentation 2018-01-10 16:25:26 -05:00
Nate Coraor 9204916ac8 Galaxy config doc corrections 2018-01-10 16:23:54 -05:00
Nate Coraor 18b3599207 Remove emperor mode reference 2018-01-10 16:20:11 -05:00
selten f1f6a19a0f #5291 Changed text, removed Admin/GetGalaxy 2018-01-10 18:15:17 +01:00
selten 15bc610cf0 #5291 fix link to HTTP getgalaxy.org 2018-01-10 18:12:32 +01:00
Nate Coraor 36ecca47e7 Major updates to the scaling doc for uWSGI 2018-01-09 18:21:22 -05:00
Dannon Baker 70941cc57b Update api quickstart doc to use default port, with a little bit of extra guidance. 2018-01-03 12:18:04 -05:00