mvdbeek
2d1b341fcd
WIP: Drop uWSGI from scaling documentation
2022-02-15 17:22:58 +01:00
mvdbeek
2895dd36e1
Add config variable for setting tus upload directory
2022-02-06 10:41:35 +01:00
mvdbeek
d0fb11c015
Drop OpenID post authentication protocols
2022-02-01 11:04:48 +01:00
John Chilton
0faf54d06c
Add option for disabling tool shed datatypes...
...
...and start the process of disabling them. These have been broken since they were introduced. They have no clear upgrade path and loading Python code from the tool shed is fundamentally not something we should be doing.
Workaround for #11915
2022-01-26 10:54:11 -05:00
Matthias Bernt
d89987c748
schema doc: add attribute table to all assertions
2022-01-20 11:39:26 +01:00
Matthias Bernt
4496311bb2
followup on xsd restructuring
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doc parsing: asserts are now choice
2022-01-20 11:39:26 +01:00
Matthias Bernt
6a4381cc78
xml assertions: tests, small improvements + xsd reformatting
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- added unit tests for all xml assertions
- restructured xsd:
- grouped general, text, tabular, archive, xml, and h5 assertions
- full definition of all assertions in xsd
- allow for "recursion" in xsd for has_archive_member and element_text
- restructured schema doc: instead of the table its now a
definition list (no more horizontal scrolling in the wide table)
also here assertions are grouped
2022-01-20 11:39:26 +01:00
John Chilton
d3b272fd10
Merge pull request #13170 from mvdbeek/max_discovered_files
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Limit maximum number of discovered files per job
2022-01-18 12:45:01 -05:00
mvdbeek
26a98ae8f4
Implement max_discovered_files
2022-01-18 11:49:00 +01:00
Nicola Soranzo
4c03520f05
Merge pull request #13129 from mvdbeek/goodbye_dave
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End of an era 😿
2022-01-14 17:16:35 +00:00
mvdbeek
40096a058a
Remove Dave C. from committers list
...
Dave Clements has moved on to Anaconda to find a new challenge.
Thanks so much for the countless things you've done @tnabtaf, you know
the Galaxy community wouldn't be what it is without you!
2022-01-06 18:06:19 +01:00
mvdbeek
5cf588c764
Remove Oleg from committers list
...
Oleg has done so much awesome stuff for us, but he's moved on to
Industry. Thanks for all your brilliant work @OlegZharkov, and hope to
see you around.
2022-01-06 17:59:26 +01:00
mvdbeek
c9aa48ea25
Fix (per-domain) favicon url
2022-01-05 14:06:12 +01:00
mvdbeek
8ce2690ea9
Implement fastAPI prefix handling
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Admins just need to set `galaxy_url_prefix`, the rest should just work.
2022-01-05 13:31:54 +01:00
Nuwan Goonasekera
01ca66fa98
Merge branch 'dev' into vault_impl
2021-12-22 23:55:37 +05:30
Sergey Golitsynskiy
bf58b5cc30
Merge pull request #13099 from ic4f/dev_migratetools
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Drop tool migration scripts and related code
2021-12-21 14:35:35 -05:00
Sergey Golitsynskiy
bc6f766d5a
Update migrated_tools_config schema description, run config-rebuild
2021-12-21 10:54:28 -05:00
Sergey Golitsynskiy
91af9c51ed
Run make config-rebuild
2021-12-21 10:54:28 -05:00
Marius van den Beek
9debf1fc6e
Merge pull request #13082 from bernt-matthias/topic/doc-param-metadata
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Add documentation for test/param/metadata in xsd
2021-12-21 10:08:56 +01:00
Nuwan Goonasekera and Enis Afgan
d4fe61a424
Update vault docs
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Co-authored-by: Enis Afgan <afgane@gmail.com >
2021-12-20 18:40:20 +05:30
Nuwan Goonasekera and Marius van den Beek
592603eb41
Add file upload test to vault
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Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com >
2021-12-20 18:00:53 +05:30
Matthias Bernt
914818098f
add doc for test/param/metadata
...
currently only linking to a stub at the planemo docs
2021-12-17 19:06:10 +01:00
Darren Cullerne
65f7259b29
Adding /doc/source/admin/reports_options.rst from make config-rebuild and additional change to file_path value in /lib/galaxy/webapps/reports/config.py
2021-12-17 09:23:03 +11:00
Nuwan Goonasekera and Marius van den Beek
3e993667e3
Typo in doc/source/admin/special_topics/vault.md
...
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com >
2021-12-15 20:08:45 +05:30
Simon Bray
d6b0ee1900
add docs for mulled-hash, few other small fixes to existing docs
2021-12-15 10:22:23 +01:00
Nicola Soranzo
98ecc39b1b
Remove PhantomJS support, dropped in Selenium 4.0
2021-12-08 08:14:10 +00:00
Nuwan Goonasekera
d9f2c0bf91
Added admin docs on configuring and using the vault
2021-12-01 21:44:44 +05:30
mvdbeek
1a08eb57b3
Make tool_evaluation_strategy configurable on app and destination level
2021-11-30 12:27:14 +01:00
mvdbeek
6794d6be93
Resolve circular dependency for ToolEvaluator
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by placing ComputeEnvironment and ActionBox under job_execution.
2021-11-29 11:22:42 +01:00
mvdbeek
9aec355752
Rename allow_tool_source_display to enable_tool_source_display
2021-11-23 12:05:46 +01:00
Nuwan Goonasekera
e1535db412
Add vault conditional dependencies
2021-11-18 01:12:23 +05:30
mvdbeek
d7c34bfdb4
Return tool source language in header,
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disable view unless admin or allow_tool_source_display is set
2021-11-15 11:33:13 +01:00
mvdbeek
bc329c7b84
Merge branch 'release_21.09' into dev
2021-11-02 11:54:42 +01:00
mvdbeek
a6207d043d
Add last 2 PRs to release notes
2021-11-02 08:57:42 +01:00
mvdbeek
4257cd5531
Edits from Beatriz
2021-11-02 08:42:22 +01:00
mvdbeek
896bd88087
More punctuation fixes!
2021-11-01 18:10:44 +01:00
mvdbeek
1c75d43646
Capitalize Backbone
2021-11-01 17:42:47 +01:00
mvdbeek
317a8b5fc1
More whitespace and punctuation fixes
2021-11-01 17:27:26 +01:00
Marius van den Beek and David López
4a1e1021a7
Remove David from release testers for 21.09
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Co-authored-by: David López <46503462+davelopez@users.noreply.github.com >
2021-11-01 16:05:48 +01:00
mvdbeek
55831413ce
One more PR
2021-11-01 13:24:13 +01:00
mvdbeek
3b4cd15666
Add remaining open PRs
2021-11-01 12:47:02 +01:00
mvdbeek
a9058c54ba
Produce Literal Blocks for config value changes
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These scroll correctly and don't fail when config description changes
includes newlines or long text.
2021-11-01 12:37:53 +01:00
mvdbeek
ef2ace8e7f
Write full release notes
2021-11-01 11:43:03 +01:00
mvdbeek
696a99bd53
More PR fixes
2021-11-01 11:31:40 +01:00
mvdbeek
11f1296d33
More fixes to PR titles
2021-11-01 10:10:13 +01:00
mvdbeek
46be208f30
Capitalize PR
2021-10-31 20:39:10 +01:00
mvdbeek
2aebc4f664
Add release testing team credits
2021-10-31 20:32:27 +01:00
mvdbeek
696331e3e8
Drop anchors
2021-10-31 20:18:01 +01:00
mvdbeek
9bfaf66603
Add release_21.09 to release toc
2021-10-31 16:25:03 +01:00
mvdbeek
b3163b1d89
Update and finalize release notes
2021-10-31 16:10:04 +01:00
mvdbeek