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2d1b341fcdbdbbc4e2c24c57cd5b6a49f24bd91d
Commit Graph
1382 Commits
Author SHA1 Message Date
Reid Wagner 71eb4eb65d Update version number. 2022-01-28 13:40:55 -06:00
Reid Wagner 0b538342a0 Store peptide IDs as strings. 
These peptide IDs were previously parsed as floats. The result was that
peptides that were too large were rounded, and the ID was no longer
meaningful, resulting in the "PSM Detail for Selected Peptides" table
not being populated.

With this change PEPTIDE_ID field is no longer parsed as a float, and
remains a string.
 2022-01-28 13:40:45 -06:00
Dannon Baker 28deb88dd6 Fix routing for tool execution from gtn webhook 2022-01-06 13:13:03 -05:00
Marius van den Beek f57730093c Merge pull request #13118 from dannon/news-gtn-hooks-safety 
Webhooks robustification for news and gtn
 2022-01-06 17:26:40 +01:00
Dannon Baker c6bcea5a8c For gtn/news frames, ensure frame is engaged prior to dismissal. 
Guarding here is simpler than tracking event handlers and making
assumptions.
 2022-01-05 08:49:55 -05:00
mvdbeek a677623df3 Fix tour builder for instances with prefix 2022-01-05 13:31:58 +01:00
Dannon Baker b9505426e2 Wrap default webhooks in iifes to prevent global pollution 2022-01-04 22:29:17 -05:00
Dannon Baker 0949d3e01a Delay iframe creation for news until it's actually clicked 2022-01-04 14:21:54 -05:00
davelopez c0134f97d6 Fix broken library datasets links 
- Some links to library elements were not replaced with the new library router paths.
- Fix undeleted dataset link in toast message.
 2021-12-13 13:46:19 +01:00
guerler 43e80d1fcf Use utilities npm package, remove utilities, fix visualizations 2021-11-13 22:20:07 -05:00
guerler 0658c1607e Declare asBoolean as module function in nvd3 2021-11-05 20:03:46 -04:00
guerler 7358c85783 Allow visualization to process either legacy string based booleans and true booleans 2021-11-01 00:54:08 -04:00
mvdbeek 497f6a9835 Merge branch 'release_21.09' into dev 2021-10-26 16:30:19 +02:00
mvdbeek 4262610b71 Merge branch 'release_21.05' into release_21.09 2021-10-26 16:29:37 +02:00
Dannon Baker c8d6d39c5a Manually hack the built static, too -- this needs followup in dev to be clean and remove artifacts 2021-10-26 08:42:08 -04:00
Dannon Baker c220f6d55a The surgical in-place fix to prebuilt msa.js to account for 'at' being in array now in ff/chrome 2021-10-26 08:42:08 -04:00
Oleg Zharkov bf78a3d2b5 Merge branch 'dev' into webpack5 2021-10-06 20:44:01 +02:00
Helena Rasche a5a90a1a59 fix branch for release notes 2021-10-01 14:37:21 +02:00
Dannon Baker bb6be48540 Drop the 'downgrade' now that 21.09 is frozen (will mer 
ge prerelease notes along with this)
 2021-09-28 08:03:01 -04:00
Dannon Baker fe3d2fbafd Merge remote-tracking branch 'upstream/dev' into webpack5 2021-09-22 09:18:14 -04:00
Dannon Baker 7925d5f8c0 Adjust welcome build location to standard dist, drop artifacts 2021-09-16 23:27:44 -04:00
Dannon Baker a14c82ad00 Swap to @galaxyproject namespace on npm 2021-09-16 23:27:40 -04:00
Alexander OSTROVSKY 24f13618c3 remove image files 2021-09-16 23:23:03 -04:00
Alexander OSTROVSKY 9b9f379265 New User Welcome page 
make runnable from pr. Still need to debug

divs out

tree

broken into components

cleaning

formatting, file names, jest tests

jest

removed image files, will be retrieved via npm or separate repo

update

plugin via webpack

webpack plugin

change to plugin to prevent repeated image downloading

update

add actual page accessible from help and registration

Full draft

jest fix, next to make package customizeable

yarn lock

fix

update

Update

Refactor from here for the confiuration stuff -- this displays the bundle

drop plugin_build_hash -- these should never be committed

Update plugin gitignore

Oops, left in a debug
 2021-09-16 23:22:57 -04:00
Helena Rasche f805b0dd17 Add future runway 2021-09-08 17:27:05 +02:00
Helena Rasche 36782f9b9d Downgrade 21.09 to 05, temporarily 2021-09-08 17:12:57 +02:00
Dannon Baker 5c78a79123 Had my comments backwards, simplify selector 2021-09-02 08:52:06 -04:00
Dannon Baker 33c64034dc Cleanup 2021-09-02 08:19:43 -04:00
Dannon Baker b5b4af7a24 Use fontawesome-regular to show no notifications 2021-09-02 08:18:37 -04:00
Helena Rasche b02cbdfad9 Implement news webhook to handle release announcements 2021-09-01 15:56:52 +02:00
Dannon Baker 2ade88fabe Merge remote-tracking branch 'upstream/dev' into webpack5 2021-08-20 09:03:51 -04:00
guerler b8c5c56d07 Fix tour based selenium test for core galaxy ui 2021-08-10 14:31:13 -04:00
guerler ea10fbe89b Make colors optional in nvd3 visualizations 2021-08-02 10:38:42 -04:00
Dannon Baker 7586efd98a Update remaining templates to new bundle entrypoints 2021-07-27 08:55:55 -04:00
Nicola Soranzo 9c08ecc258 Replace fa-refresh icon with fa-redo for job re-run buttons 
to distinguish it from the sync button we use e.g. to refresh the history.
 2021-06-15 23:23:01 +01:00
mvdbeek 2b9a6a96a4 Merge branch 'release_21.01' into dev 2021-04-27 16:13:10 +02:00
Helena Rasche 19d3119428 Patch to click the button which should be more stable 2021-04-14 17:08:05 +02:00
Bjoern Gruening bfbb332fc7 cleanup the supported filestypes for Nora 2021-03-05 14:47:31 -05:00
Bjoern Gruening 853fc31253 cleanup the supported filestypes for Nora 2021-03-05 09:48:30 +01:00
Nate Coraor a2d1625780 Merge remote-tracking branch 'upstream/release_21.01' into dev 2021-03-01 16:52:02 -05:00
Dannon Baker 43e5ee0e64 Nora visualization version bump incorporating a few upstream bugfixes 
(protocol fix supporting https, which was noticed on on usegalaxy.org,
more)
 2021-02-24 22:45:08 -05:00
Nicola Soranzo 7dbdce3be2 Merge branch 'release_21.01' into dev 2021-02-19 18:03:30 +00:00
Helena 4cfcfef900 Merge branch 'release_21.01' into gig-tracking 2021-02-16 16:17:17 +01:00
Helena Rasche 3906430986 Add tracking code to webhook for GTN stats 2021-02-16 15:37:44 +01:00
mvdbeek dd7aa6ec38 Merge branch 'release_21.01' into dev 2021-02-08 16:01:53 +01:00
Dannon Baker 26b95976ab Merge remote-tracking branch 'upstream/release_20.09' into release_21.01 2021-02-08 09:40:08 -05:00
Dannon Baker 25d9f03cec minor cleanup when testing 2021-02-08 09:24:29 -05:00
Helena Rasche b6e2299c93 Persist scroll/url information, in both chrome & firefox 2021-02-04 17:49:51 +01:00
Nicola Soranzo d26b3d9848 Fix all E203, E741 and W504 flake8 errors 2021-01-18 10:35:41 +00:00
Nicola Soranzo 452aba9ee3 Fix remaining issues reported by bugbear; add it to flake8 reqs 2021-01-16 05:58:15 +00:00