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11 Commits
Author SHA1 Message Date
peterjc 2e36fdb0bd Include all three BLAST .loc files in data table conf 2016-11-04 17:00:13 +00:00
Peter Cock fc027124e7 Fix BLAST database *.loc files inconsistency 
We should have all of the ``blast*.loc`` files in the sample configuration, or none of them.

Historically Galaxy included only the nucleotide BLAST database ``blastdb.loc`` file for use with mega-blast, with ``blastdb_p.loc`` later for protein databases added as part of the BLAST+ suite (which initially was in the main Galaxy repository).

In a3018feb02 the mega-blast tool was moved to the Tool Shed, and the ``blastdb.loc`` entry removed. Likewise the BLAST+ tools were moved to the Tool Shed, but the ``blastdb_p.loc`` entry remains.

Later (on the Tool Shed only?) ``blastdb_d.loc``was added for protein domain databases.
 2016-10-26 10:45:33 +01:00
Daniel Blankenberg 59dd11c8bc Fix duplicate allow_duplicate_entries 2016-07-21 16:59:03 -04:00
Daniel Blankenberg ab15495b8e Set allow_duplicate_entries="False" for built-in Tool Data Tables. 2016-07-21 16:36:20 -04:00
Daniel Blankenberg 55074c8f33 Add Phinch as an external display application. Currently linking to a personal copy of Phinch, since it requires https://github.com/PitchInteractiveInc/Phinch/pull/54 2016-04-01 15:38:53 -04:00
Daniel Blankenberg 0c57453c96 Add vcf.iobio as a display application. 2016-03-15 12:57:47 -04:00
Daniel Blankenberg 46728c5728 Add bam.iobio as a display application. 2016-03-15 12:56:54 -04:00
youri 83bc5b74ff liftOver.loc was not accessible from local data 2015-08-11 10:58:06 +02:00
Daniel Blankenberg 1260d07a28 Have IGV external display application load a set of links for available genomes via a tool data table that reads a URL (http://igv.broadinstitute.org/genomes/genomes.txt). The manually specified builds links should now be used to add additional builds, or for alias mapping (e.g. hg_g1k_v37-->b37). 2015-02-27 15:50:28 -05:00
Daniel Blankenberg 30f1815658 Load genomes list from data tables for visualizations. Based off of Pull Request: https://bitbucket.org/galaxy/galaxy-central/pull-request/601/load-genomes-list-from-data-tables-for/diff 2015-01-26 15:11:06 -05:00
Nate Coraor 575e7fb804 Move samples configs to config subdirectory. 2014-09-15 11:28:18 -04:00