 Daniel Blankenberg
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12b858f9cd
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Make form input auto-focus declarative.
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2013-05-08 10:58:52 -04:00 |
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Daniel Blankenberg
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fb0cd7b304
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Pack scripts
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2013-05-08 10:45:12 -04:00 |
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Jeremy Goecks
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76a267c3ff
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Trackster: only query feature tracks for feature locations.
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2013-05-03 10:52:11 -04:00 |
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Jeremy Goecks
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d420857e86
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Trackster: add editable min, max labels to tracks.
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2013-05-02 15:14:50 -04:00 |
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Jeremy Goecks
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dbe33372be
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Trackster: implement generic functionality for adding and editing track min/max values. Also redraw by default on resize.
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2013-05-02 13:15:02 -04:00 |
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Jeremy Goecks
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0a19ca75fe
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Trackster: optionally clear tile cache when requesting a track redraw.
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2013-05-02 10:58:19 -04:00 |
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Jeremy Goecks
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f78f5acbfb
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Trackster: remove nodraw parameter because it is no longer needed.
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2013-05-02 10:33:28 -04:00 |
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Jeremy Goecks
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8dd44babab
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Trackster: whitespace fixes.
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2013-05-02 09:41:17 -04:00 |
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Jeremy Goecks
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78d1075274
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Trackster: make composite track draw helper compatible with dd4b953.
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2013-05-01 15:08:25 -04:00 |
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Jeremy Goecks
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b3f509da1c
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Visualization framework: (1) fix disappearing Y axis labels for line tracks and (2) update dataset dict to correspond with new description.
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2013-05-01 14:04:23 -04:00 |
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Jeremy Goecks
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0aa8e61490
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Trackster: refactoring to use dataset attributes rather than .dataset_id and .hda_ldda
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2013-04-30 09:12:18 -04:00 |
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Jeremy Goecks
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ccd888511b
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(a) Fetch sample names before drawing variant track and (b) update dataset metadata when changed.
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2013-04-20 15:04:07 -04:00 |
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Jeremy Goecks
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f8235dae3b
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Trackster: refactor variant sample labels and fix line-height issues.
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2013-04-20 14:28:11 -04:00 |
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Jeremy Goecks
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262d43ad0b
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Visual analysis enhancements: (a) do not manually convert to json because it is not necessary and (b) gracefully handle missing sample names.
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2013-04-20 11:05:42 -04:00 |
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Jeremy Goecks
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dc47eb9b06
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Trackster: use Deferreds to only drawn tiles only; this improves performance significantly.
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2013-04-19 14:33:11 -04:00 |
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Jeremy Goecks
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c77a9ced8f
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Trackster: fixes for calculating variant track height.
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2013-04-19 11:53:00 -04:00 |
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Jeremy Goecks
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98d560193f
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Automated merge.
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2013-04-19 11:01:43 -04:00 |
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Jeremy Goecks
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3c28754e91
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Trackster: better handling of variant track labels.
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2013-04-19 10:56:44 -04:00 |
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Daniel Blankenberg
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6c6e08a7ef
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Fixes for trackster visualizing single sample vcf and for getting colors of non-standard bases.
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2013-04-18 15:39:32 -04:00 |
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Daniel Blankenberg
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4f620dd979
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Auto Focus on first item on forms.
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2013-04-18 13:14:14 -04:00 |
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Carl Eberhard
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57f8714725
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History panel: ensure syncing of history state and hda states by passing hda dicts to get_history_dict; pack scripts
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2013-04-17 16:36:01 -04:00 |
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Jeremy Goecks
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7ecde71639
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Trackster: add summary and sample labels to variant track + small style adjustments.
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2013-04-17 15:10:03 -04:00 |
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Jeremy Goecks
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8a376d2838
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Whitespace additions.
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2013-04-17 10:58:19 -04:00 |
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Jeremy Goecks
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d0c9c657be
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Use full HDA/LDDA dict to get data into Trackster.
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2013-04-17 10:25:36 -04:00 |
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Carl Eberhard
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12bdb2aec3
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History panel: allow query val for hda_id to scroll specific hda into view, cleanup; browser tests: add download, info, and rerun button tests
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2013-04-16 14:03:11 -04:00 |
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Jeremy Goecks
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ec903602ff
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Visual analytics enhancements and fixes: (i) handle uncalled alleles in VCF display; (b) whitespace fixes; and (c) move methods so that non-feature tracks can be used when running tools; (d) fixes for SamDataProvider constructor; (e) fix for handling paired-end reads when using reference-based packing.
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2013-04-16 09:24:45 -04:00 |
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Jeremy Goecks
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f1530d4e32
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Fix bug in Trackster that offset difference indication between bases instead of over bases.
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2013-04-15 13:29:34 -04:00 |
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Jeremy Goecks
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f74aea2019
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Trackster: enhance VCF track to show sample data and summary data and use base coloring.
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2013-04-15 13:20:25 -04:00 |
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Jeremy Goecks
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f442f2116d
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Merge in stable branch.
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2013-04-12 16:16:17 -04:00 |
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Jeremy Goecks
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de1a836a73
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Fixes for running tools in Trackster.
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2013-04-12 16:12:01 -04:00 |
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Carl Eberhard
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505684068b
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history panel: move history options menu code into index.mako, localization pass; pack scripts
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2013-04-11 16:48:47 -04:00 |
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Carl Eberhard
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062387374c
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base_panels: move quota meter js into base_panels, provide bootstrapped user JSON, create Galaxy js namespace; history panel: don't use backbone-relational in dataset, user, or history; misc jsHint cleanup; expose_api: defend against no key provided; pack scripts
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2013-04-11 13:00:38 -04:00 |
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Aysam Guerler
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959a335b67
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Enhance button for trackster visualization in data display viewer
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2013-04-10 17:30:27 -04:00 |
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Aysam Guerler
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28792f5e52
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Enhance button for trackster visualization in data display viewer
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2013-04-10 16:50:54 -04:00 |
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Aysam Guerler
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a6b0cdcfc4
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Enhance button for trackster visualization in data display viewer
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2013-04-10 13:19:10 -04:00 |
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Carl Eberhard
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b1c3cb55ff
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Edit attributes: HDA name, info, annotation: display 'None' values in inputs as empty strings; History panel: remove last modal/alert
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2013-04-10 12:22:11 -04:00 |
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Carl Eberhard
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73a4e9ded6
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History panel: hack to show expanded HDA bodies in chrome; pack scripts
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2013-04-10 11:30:37 -04:00 |
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Jeremy Goecks
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4ce073f25a
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Trackster: Implement and use reference-based read drawing when genome reference is available. This reduces the data transfer for read tracks by ~50%. Fix bugs in reference-based data provider code and remove client-side debugging statements.
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2013-04-10 10:34:30 -04:00 |
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Carl Eberhard
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f799e0fded
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history panel: handle errors better on the client side, remove alerts, continue update attempts if error is 'Bad Gateway'
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2013-04-09 19:17:51 -04:00 |
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Carl Eberhard
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551cf6b971
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history panel: better error-handling
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2013-04-09 16:39:43 -04:00 |
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Aysam Guerler
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6cc810345b
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Enhance button for trackster visualization in data display viewer
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2013-04-09 13:59:56 -04:00 |
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Aysam Guerler
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1633386bfc
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Inserted a button for trackster visualization into the BED-file data display viewer.
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2013-04-08 10:19:37 -04:00 |
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Carl Eberhard
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4477aeab85
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history panel: do not fetch display apps if there are no hdas yet
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2013-04-05 14:01:59 -04:00 |
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Carl Eberhard
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b02f3851e9
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history panel: fix test for partial/full render of hdas to prevent 'blinking'2
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2013-04-05 13:50:24 -04:00 |
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Dannon Baker
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d9040ccb99
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Workflow Editor: Fix for last-remaining-workflow-output-unremovable. Clarify declaration (actually a bug, one was undefined, one was false).
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2013-04-03 17:46:19 -04:00 |
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Carl Eberhard
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a4ec54d727
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re-run handlebars on available templates; pack scripts
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2013-04-03 17:20:01 -04:00 |
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Carl Eberhard
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255e2d516f
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update handlebars.runtime.js 1.0.beta.6 -> 1.0.rc1
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2013-04-03 17:15:05 -04:00 |
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Carl Eberhard
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c8cfcc2fb3
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That went well. (rollback changes to backbone, backbone-relational, and handlebars.runtime to not break every possible thing)
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2013-04-02 14:41:29 -04:00 |
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Carl Eberhard
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ce6c114c6a
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update js libs: underscore 1.3.1 -> 1.4.4, backbone 0.9.2 -> 1.0, backbone-relational 0.5.0 -> 0.8.0, handlebars 1.0.beta.6 -> 1.0.rc1
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2013-04-02 14:27:23 -04:00 |
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Carl Eberhard
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96f5b1854e
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pack_scripts.py: have yuicompressor use utf-8 as the charset; remove unused packed scripts; update d3.js from 2.9.2 to 3.1.4
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2013-04-02 14:20:55 -04:00 |
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