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Commit Graph
1956 Commits
Author SHA1 Message Date
Björn Grüning 7e394f7aed Merge pull request #17327 from PlushZ/doc-data-source 
add documentation for data source tool
 2024-01-19 19:34:36 +01:00
PlushZ a2ed0c08e5 add doc for data source 2024-01-18 18:36:14 +01:00
John Davis 9f4254f66b Merge pull request #17322 from mvdbeek/session_docs 
Document SQLAlchemy session lifespan
 2024-01-18 12:35:27 -05:00
Marius van den Beek 0744959008 Fix typo 2024-01-18 16:31:26 +01:00
Marius van den Beek 0e4f6fed84 Drop extra newline 2024-01-18 16:30:20 +01:00
Marius van den Beek b367c09ae1 Don't explain why handling state at the outermost layer is a good idea 2024-01-18 16:30:02 +01:00
mvdbeek 7f2b8a714f Tweak the WSGI, ASGI, Celery section 2024-01-18 16:28:37 +01:00
John Davis 2e9c2241d0 Apply edits to session docs 2024-01-18 16:23:53 +01:00
mvdbeek ed98d7d21a Document SQLAlchemy session lifespan 2024-01-18 12:21:56 +01:00
Nate Coraor a65dd8ae49 Support configuring object store inline 2023-12-20 14:11:22 -05:00
mvdbeek 5d401923fc Merge branch 'release_23.2' into dev 2023-12-14 11:44:09 +01:00
Nate Coraor 0598a4be81 Document falsey values of job_metrics 2023-12-12 16:53:54 -05:00
Nate Coraor 91ef184f39 Support configuring job metrics inline, update documentation 2023-12-12 14:56:38 -05:00
Dannon 426e24ff24 Merge pull request #16954 from common-workflow-lab/python3.8 
Python 3.8 as minimum
 2023-11-28 23:53:14 -05:00
Dannon f2034f6cb4 Merge pull request #16798 from ElectronicBlueberry/galaxy-help-forum-integration 
[EGD 2023 Cofest] Galaxy help forum integration
 2023-11-28 09:57:33 -05:00
Dannon 4aae2aab5e Merge pull request #17017 from dannon/add-committer-ahmed 
[PROCEDURES] Add Ahmed as a committer
 2023-11-27 10:48:12 -05:00
M BerntandNicola Soranzo 378a144597 Apply suggestions from code review 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2023-11-27 13:40:33 +01:00
davelopez ccbac95e85 Rename config option 2023-11-27 11:25:52 +01:00
davelopez 885ceb2d8e Add config options for help forum integration 2023-11-27 11:25:51 +01:00
Michael R. Crusoe c00967cca4 Python 3.8 as new minimum version 
Fixes: https://github.com/galaxyproject/galaxy/issues/16394

Also upgrade code to Python 3.8 syntax with:

```
ack --type=python -f | grep -v '^lib/galaxy/schema/bco/\|^lib/galaxy/schema/drs/\|lib/tool_shed_client/schema/trs.*.py\|^tools/\|^.venv/\|^.tox/' | grep -v '^lib/galaxy/files/sources/\|^lib/galaxy/job_metrics/\|^lib/galaxy/objectstore/\|^lib/galaxy/tool_util/\|^lib/galaxy/util/' | xargs pyupgrade --py38-plus
```
 2023-11-26 18:34:09 +00:00
Matthias Bernt 878e9fd10d reorder elements of tool conf description 2023-11-24 16:56:17 +01:00
M BerntandNicola Soranzo c6bb6767ab Reformulations 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2023-11-24 16:53:57 +01:00
M BerntandNicola Soranzo 8a87d75b8d reformulation 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2023-11-24 16:24:33 +01:00
Matthias Bernt 16b2bf20b2 add docs for tool panel and panel view administration 2023-11-24 12:37:55 +01:00
Sveinung Gundersen 25065986e1 Added note on the removal of interactivetools_shorten_url 2023-11-15 19:05:22 +01:00
Sveinung Gundersen ed3b2885ec Revert removal of docs for default pools argument 2023-11-15 18:03:14 +01:00
Sveinung GundersenandMarius van den Beek 98f06670f9 Less secluded docker containers 
Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com>
 2023-11-15 17:35:39 +01:00
Sveinung Gundersen 09020ed3f4 Removed info about default pools value as this is currently incorrect. Have also wasted time earlier due to this 2023-11-15 12:54:14 +01:00
Sveinung Gundersen da5a945bf1 Updated config sample files and interactive tools documentation 2023-11-15 12:54:14 +01:00
Sveinung Gundersen bf422d3474 Removed "interactivetools_shorten_url" 2023-11-15 12:54:14 +01:00
Dannon Baker c48a07aab0 Add Ahmed to committers group. 2023-11-13 10:22:17 -05:00
John Davis f91693dc6e Merge pull request #16783 from SergeyYakubov/get-rid-of-filename-property 
Replace file_name property with get_file_name function
 2023-11-08 17:19:40 -05:00
Yakubov, Sergey c30a4c06c2 Replace file_name property with get_file_name function 2023-11-08 17:17:14 -05:00
John Chilton c1d3eb59ed Rebuild config schema. 2023-11-06 10:11:28 -05:00
davelopez 32b3a6d83f Move client schema package into api/schema 2023-10-23 18:13:42 +02:00
Heinz-Alexander FuettererandNicola Soranzo 347e7b8301 chore: fix typos 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2023-10-13 16:29:27 +02:00
mvdbeek 0bb93e562e Merge branch 'release_23.1' into dev 2023-10-06 16:17:22 -04:00
John Davis 0cb07fd80f Add deprecation notice for api/search 2023-10-06 13:43:55 -04:00
mvdbeek b40f1088d0 Merge branch 'release_23.0' into release_23.1 2023-10-05 11:37:54 -04:00
mvdbeek 2920429d50 Accomodate new version scheme in doc/source/conf.versioning.py 2023-09-29 16:29:18 +02:00
John Davis 049602116b Add deprecation notice for api/search 2023-09-28 11:05:15 -04:00
Dannon Baker f10e470916 Merge branch 'release_23.1' into 'release_23.2' 2023-09-25 18:06:56 -04:00
John Davis 84b9fa3737 Update doc/source/dev/build_a_job_runner.rst 2023-09-25 16:41:24 -04:00
Dannon Baker 11fac153b4 User facing release notes updates, images. 2023-09-25 15:52:31 -04:00
Dannon Baker 65cbe519c4 Final release note PR update. 2023-09-25 12:53:25 -04:00
Dannon Baker b9a6d176a0 Run and include release-diff output for 23.1 2023-09-25 11:51:48 -04:00
Dannon Baker ab8a645bec Remaining PRs reconciled. 2023-09-25 10:21:25 -04:00
Dannon Baker 06773368ae Fix milestones for several PRs, regenerate. 2023-09-25 10:21:25 -04:00
DannonandNicola Soranzo d6a8acac12 Apply suggestions from code review 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2023-09-25 10:21:25 -04:00
Nicola Soranzo 9e8624f9d5 Add deprecation of Python 3.7 for v24.0 2023-09-25 10:21:25 -04:00