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7e394f7aed
Merge pull request #17327 from PlushZ/doc-data-source
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add documentation for data source tool
2024-01-19 19:34:36 +01:00
PlushZ
a2ed0c08e5
add doc for data source
2024-01-18 18:36:14 +01:00
John Davis
9f4254f66b
Merge pull request #17322 from mvdbeek/session_docs
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Document SQLAlchemy session lifespan
2024-01-18 12:35:27 -05:00
Marius van den Beek
0744959008
Fix typo
2024-01-18 16:31:26 +01:00
Marius van den Beek
0e4f6fed84
Drop extra newline
2024-01-18 16:30:20 +01:00
Marius van den Beek
b367c09ae1
Don't explain why handling state at the outermost layer is a good idea
2024-01-18 16:30:02 +01:00
mvdbeek
7f2b8a714f
Tweak the WSGI, ASGI, Celery section
2024-01-18 16:28:37 +01:00
John Davis
2e9c2241d0
Apply edits to session docs
2024-01-18 16:23:53 +01:00
mvdbeek
ed98d7d21a
Document SQLAlchemy session lifespan
2024-01-18 12:21:56 +01:00
Nate Coraor
a65dd8ae49
Support configuring object store inline
2023-12-20 14:11:22 -05:00
mvdbeek
5d401923fc
Merge branch 'release_23.2' into dev
2023-12-14 11:44:09 +01:00
Nate Coraor
0598a4be81
Document falsey values of job_metrics
2023-12-12 16:53:54 -05:00
Nate Coraor
91ef184f39
Support configuring job metrics inline, update documentation
2023-12-12 14:56:38 -05:00
Dannon
426e24ff24
Merge pull request #16954 from common-workflow-lab/python3.8
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Python 3.8 as minimum
2023-11-28 23:53:14 -05:00
Dannon
f2034f6cb4
Merge pull request #16798 from ElectronicBlueberry/galaxy-help-forum-integration
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[EGD 2023 Cofest] Galaxy help forum integration
2023-11-28 09:57:33 -05:00
Dannon
4aae2aab5e
Merge pull request #17017 from dannon/add-committer-ahmed
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[PROCEDURES] Add Ahmed as a committer
2023-11-27 10:48:12 -05:00
M Bernt and Nicola Soranzo
378a144597
Apply suggestions from code review
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2023-11-27 13:40:33 +01:00
davelopez
ccbac95e85
Rename config option
2023-11-27 11:25:52 +01:00
davelopez
885ceb2d8e
Add config options for help forum integration
2023-11-27 11:25:51 +01:00
Michael R. Crusoe
df807e6d17
Use the walrus := operator!
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Fixed by running:
```
ack --type=python -f | grep -v '^lib/galaxy/schema/bco/\|^lib/galaxy/schema/drs/\|^tools/\|^.venv/\|^.tox/' | grep -v '^lib/galaxy/files/sources/\|^lib/galaxy/job_metrics/\|^lib/galaxy/objectstore/\|^lib/galaxy/tool_util/\|^lib/galaxy/util/' | xargs auto-walrus
make format
```
Note that the directories for the packages listed in
`packages/packages_for_pulsar_by_dep_dag.txt`
were explictly excluded.
2023-11-26 18:34:10 +00:00
Michael R. Crusoe
c00967cca4
Python 3.8 as new minimum version
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Fixes: https://github.com/galaxyproject/galaxy/issues/16394
Also upgrade code to Python 3.8 syntax with:
```
ack --type=python -f | grep -v '^lib/galaxy/schema/bco/\|^lib/galaxy/schema/drs/\|lib/tool_shed_client/schema/trs.*.py\|^tools/\|^.venv/\|^.tox/' | grep -v '^lib/galaxy/files/sources/\|^lib/galaxy/job_metrics/\|^lib/galaxy/objectstore/\|^lib/galaxy/tool_util/\|^lib/galaxy/util/' | xargs pyupgrade --py38-plus
```
2023-11-26 18:34:09 +00:00
Matthias Bernt
878e9fd10d
reorder elements of tool conf description
2023-11-24 16:56:17 +01:00
M Bernt and Nicola Soranzo
c6bb6767ab
Reformulations
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2023-11-24 16:53:57 +01:00
M Bernt and Nicola Soranzo
8a87d75b8d
reformulation
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2023-11-24 16:24:33 +01:00
Matthias Bernt
16b2bf20b2
add docs for tool panel and panel view administration
2023-11-24 12:37:55 +01:00
Sveinung Gundersen
25065986e1
Added note on the removal of interactivetools_shorten_url
2023-11-15 19:05:22 +01:00
Sveinung Gundersen
ed3b2885ec
Revert removal of docs for default pools argument
2023-11-15 18:03:14 +01:00
Sveinung Gundersen and Marius van den Beek
98f06670f9
Less secluded docker containers
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Co-authored-by: Marius van den Beek <m.vandenbeek@gmail.com >
2023-11-15 17:35:39 +01:00
Sveinung Gundersen
09020ed3f4
Removed info about default pools value as this is currently incorrect. Have also wasted time earlier due to this
2023-11-15 12:54:14 +01:00
Sveinung Gundersen
da5a945bf1
Updated config sample files and interactive tools documentation
2023-11-15 12:54:14 +01:00
Sveinung Gundersen
bf422d3474
Removed "interactivetools_shorten_url"
2023-11-15 12:54:14 +01:00
Dannon Baker
c48a07aab0
Add Ahmed to committers group.
2023-11-13 10:22:17 -05:00
John Davis
f91693dc6e
Merge pull request #16783 from SergeyYakubov/get-rid-of-filename-property
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Replace file_name property with get_file_name function
2023-11-08 17:19:40 -05:00
Yakubov, Sergey
c30a4c06c2
Replace file_name property with get_file_name function
2023-11-08 17:17:14 -05:00
John Chilton
c1d3eb59ed
Rebuild config schema.
2023-11-06 10:11:28 -05:00
davelopez
32b3a6d83f
Move client schema package into api/schema
2023-10-23 18:13:42 +02:00
Heinz-Alexander Fuetterer and Nicola Soranzo
347e7b8301
chore: fix typos
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2023-10-13 16:29:27 +02:00
mvdbeek
0bb93e562e
Merge branch 'release_23.1' into dev
2023-10-06 16:17:22 -04:00
John Davis
0cb07fd80f
Add deprecation notice for api/search
2023-10-06 13:43:55 -04:00
mvdbeek
b40f1088d0
Merge branch 'release_23.0' into release_23.1
2023-10-05 11:37:54 -04:00
mvdbeek
2920429d50
Accomodate new version scheme in doc/source/conf.versioning.py
2023-09-29 16:29:18 +02:00
John Davis
049602116b
Add deprecation notice for api/search
2023-09-28 11:05:15 -04:00
Dannon Baker
f10e470916
Merge branch 'release_23.1' into 'release_23.2'
2023-09-25 18:06:56 -04:00
John Davis
84b9fa3737
Update doc/source/dev/build_a_job_runner.rst
2023-09-25 16:41:24 -04:00
Dannon Baker
11fac153b4
User facing release notes updates, images.
2023-09-25 15:52:31 -04:00
Dannon Baker
65cbe519c4
Final release note PR update.
2023-09-25 12:53:25 -04:00
Dannon Baker
b9a6d176a0
Run and include release-diff output for 23.1
2023-09-25 11:51:48 -04:00
Dannon Baker
ab8a645bec
Remaining PRs reconciled.
2023-09-25 10:21:25 -04:00
Dannon Baker
06773368ae
Fix milestones for several PRs, regenerate.
2023-09-25 10:21:25 -04:00
Dannon and Nicola Soranzo
d6a8acac12
Apply suggestions from code review
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Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com >
2023-09-25 10:21:25 -04:00
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