11 Commits

Include renames

Author	SHA1	Message	Date
Daniel Blankenberg	1e55e46201	Performance enhancements for Build custom track for UCSC genome browser tool.	2012-10-16 15:25:01 -04:00
Greg Von Kuster	af3b0669aa	Eliminated all Python2.4 references, added necessary assert statements to ensure minimum version of Python 2.4.	2008-03-28 15:24:50 +00:00
Greg Von Kuster	9879521d32	Fix for build_ucsc_custom_track, will no longer throw server error if history does not include valid input dataset, tool also now skips invalid lines instead of throwing exception.	2008-03-14 19:41:56 +00:00
Greg Von Kuster	135c9a0377	Removed the remainder of the tool version subdirectories.	2008-03-03 18:38:57 +00:00
Greg Von Kuster	9262212acd	Added tool version directories for validation and visualization tools directories.	2008-02-22 20:36:20 +00:00
Guruprasad Anada	5e4177b827	Modified "Build custom track" to work on Interval files without strand column.	2008-02-08 16:11:03 +00:00
James Taylor	2a39285bb3	Fix for building custom tracks from interval files.	2007-11-10 01:32:19 +00:00
Greg Von Kuster	b22fecf1d3	Fix for invalid interval file sent to build_ucsc_custom_track.	2007-08-03 15:15:43 +00:00
Jianbin He	a6d5eaa93f	rollback. sorry, removed the wrong files	2007-06-04 14:18:13 +00:00
Jianbin He	251b052221	remove tool build_ucsc_custom_track	2007-06-04 14:11:53 +00:00
James Taylor	7bfc238304	Many changes related to tool interfaces and jobs (DATABASE CHANGE, READ) ... #) An "xy_plot" tool and a new "build_ucsc_custom_track" tool that demonstrate the various features added here. #) Grouping constructs for tool parameters: - "repeat" element allows for a set of parameters to be repeated an arbitrary number of times - "conditional" element allows choosing a set of parameters to display based on the value of another parameter These constructs can be arbitrarily nested. Their values are structured and can be used in hooks, validation, et cetera #) Support for generating arbitrary config files to pass to a tool #) Command lines are now full Cheetah templates #) Better job error reporting, includes tracebacks for internal errors preparing the job (database change required, see below!) #) Preparation of command line, config files, exec_before_job hook moved into job execution stage #) Parameter values now jsonified before storing in database (this is much more rigorous that before, and restoring from the database now works properly) DATABASE CHANGE: alter table job add column traceback text;	2007-05-19 16:40:55 +00:00