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25,160 Commits 63 Branches 243 Tags
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Commit Graph
252 Commits
Author SHA1 Message Date
Martin Cech 59a6d07b7b Merge pull request #3010 from nsoranzo/merge_release_16.07 
Merge release_16.07 into dev
 2016-10-06 12:10:11 -04:00
John Chilton 2b9034d597 Update some old information in API guideline docs. 2016-10-05 21:37:11 -04:00
Nicola Soranzo a2ee8d10af Merge branch 'release_16.07' into dev 
Conflicts:
	doc/source/admin/conda_faq.rst
	static/maps/mvc/ui/ui-modal.js.map
	static/scripts/bundled/libs.bundled.js
	static/scripts/bundled/libs.bundled.js.map
	static/scripts/mvc/ui/ui-modal.js
 2016-10-05 20:34:50 +01:00
Nicola Soranzo 2899372791 Update conda_faq.rst 2016-10-03 19:46:27 +01:00
Martin Cech ba274e37f2 describe the conda installation behavior a bit better 2016-10-03 14:31:46 -04:00
Martin Cech 375ed8cc81 polish resolvers section in conda faq docs 2016-10-03 13:20:15 -04:00
Daniel Blankenberg 10703fac3a Merge pull request #2976 from martenson/issues-on-par-with-reality 
bring issues.rst on par with reality
 2016-09-27 16:01:04 -04:00
Martin Cech 8054da9fb4 Update issues.rst 2016-09-27 15:16:43 -04:00
Martin Cech 750cb7c584 encourage bug reporting in tool schema 2016-09-26 12:52:52 -04:00
John Chilton a8bc9d5d16 XSD Generated Tool Documentation. 
- Add script to generate Markdown documentation from the XSD.
 - Add Makefile target to build these docs, convert to HTML, and open respectively.
 2016-09-21 08:41:12 -04:00
Enis Afgan 97b748c73a Shorten Conda environment naming as per https://github.com/galaxyproject/galaxy/commit/e9d81500caa3526200b204270aca175839f36f56 
Thanks @lparsons.
 2016-09-02 10:34:56 -04:00
Enis Afgan ecdbf4d0b5 Address PR #2891 comments 2016-09-01 17:01:56 -04:00
Enis Afgan 07cf96c260 Update Conda FAQ 2016-09-01 15:55:54 -04:00
Marius van den Beek e645036973 Merge pull request #2871 from remimarenco/patch-8 
Add the <conda_prefix> in 12. and fix typo
 2016-08-30 13:18:33 +02:00
Rémi Marenco 579ea41085 Update Marius advice 2016-08-30 05:08:26 -04:00
Rémi Marenco 040dd33980 Fix typo 2016-08-29 19:42:10 -04:00
Rémi Marenco d86ee37060 Add the <conda_prefix> in 12. and fix typo 
I am adding the ``<conda_prefix>/envs`` to check for the package to have been properly installed (if people have brought their own Conda).

And fixing ``conda_prefix`` to stay consistent in the doc (``<conda_prefix>``).
 2016-08-29 19:20:04 -04:00
Nate Coraor 4ad0bee552 Merge branch 'release_16.07' into dev 2016-08-26 13:40:03 -04:00
Martin Cech 3e65a165b7 fix inclusion of release notes in announcement 2016-08-25 14:32:10 -04:00
John Chilton 99fca27270 Merge branch 'release_16.07' into dev 2016-08-25 13:41:04 -04:00
John Chilton 3248b679ac Merge pull request #2850 from martenson/docs_conda 
[16.07] conda docs - add TOC
 2016-08-24 13:37:39 -04:00
John Chilton df47bd2007 Merge pull request #2821 from martenson/16.07_release_notes 
[16.07] curated release notes for 16.07
 2016-08-24 13:36:16 -04:00
Martin Cech 08b2bda13b change links to target official docs 2016-08-24 13:18:26 -04:00
Martin Cech 7326498335 improve conda doc to include TOC 2016-08-24 12:25:10 -04:00
Martin Cech 779c357dca Merge branch 'docs_conda' of https://github.com/martenson/galaxy into docs_conda 2016-08-24 11:43:13 -04:00
Martin Cech 3d0bf645ab fix tiny things in docs 2016-08-24 11:28:32 -04:00
Dannon Baker e52dbde3e4 Conda/conda standardization 2016-08-23 17:45:56 -04:00
Martin Cech aedfdffafe add more literal includes 2016-08-23 17:41:07 -04:00
Martin Cech 453c98d8ad this one is even weirder than the ones before 2016-08-23 17:35:03 -04:00
Martin Cech e33f8fe5b6 replace apostrophes 2016-08-23 17:33:25 -04:00
Martin Cech 04f22b70a4 fix plural, split lines to prevent indentation 2016-08-23 17:14:27 -04:00
Martin Cech 01a24f6560 rst problems 2016-08-23 15:53:37 -04:00
Martin Cech 4d19755c13 add conda docs converted and modified from IUC googledoc 2016-08-23 15:44:46 -04:00
Eric Rasche c6c646ead4 Document the Chat Server 2016-08-23 18:18:30 +00:00
Martin Cech 26ceef668c announce conda as beta, link the IUC doc, link DTD wiki 2016-08-22 14:05:44 -04:00
Martin Cech 3d4300e542 tweak wording of notes 2016-08-22 11:56:14 -04:00
Martin Cech f0ffa9c594 drop GRT reference 2016-08-22 11:51:06 -04:00
John Chilton 8f571bae71 Wording fix thanks to @nsoranzo. 2016-08-22 11:47:22 -04:00
John Chilton 0437084545 Another spelling fix thanks to @nsoranzo. 2016-08-22 11:46:29 -04:00
John Chilton e1060bd18f Spelling fix thanks to @nsoranzo. 2016-08-22 11:44:28 -04:00
John Chilton 9b96d9dbfa More user-focused language in release notes. 2016-08-22 11:31:10 -04:00
Martin Cech c82719f22d drop subheaders, reorder, tweak to wording 2016-08-22 11:09:31 -04:00
John Chilton 113999e5d5 Tweaks to language of many of enhancements in 16.07 release notes. 2016-08-22 10:59:13 -04:00
Martin Cech 96bdde85bf add a highlight, update git commands 2016-08-22 10:34:51 -04:00
Nicola Soranzo 53570e471e Merge some entries, rephrasing and fixes 2016-08-22 12:22:41 +01:00
Martin Cech f47ea88c23 initial curated release notes for 16.07 2016-08-19 13:05:05 -04:00
Dannon Baker 0f5239dd32 Merge pull request #2700 from varunshankar/doc_dev 
A tutorial on Build runner for galaxy
 2016-08-11 15:58:42 -04:00
Varun Shankar S 115df2963e Update build_a_job_runner.rst 2016-08-10 01:59:59 +05:30
Varun Shankar S a06347102d Update build_a_job_runner.rst 2016-08-10 01:56:56 +05:30
Varun Shankar S dbd5c84835 Update build_a_job_runner.rst 2016-08-06 01:01:02 +05:30