Carl Eberhard
b18cfa09b0
UI, collections: fix DatasetCollectionElement and DatasetAssociation id collision in DCECollection by preserving Element id in idAttribute 'element_id'
2015-07-05 13:13:13 +01:00
guerler
61024b832e
Add missing packed files
2015-06-24 15:42:46 -04:00
guerler
e51cd719dc
Fix remaining qunit test cases for the workflow editor
2015-06-24 13:56:02 -04:00
guerler
63fee8f7ce
Undo merged fixed, replace underscore path rewrite
2015-06-24 12:33:17 -04:00
John Chilton
110b12e571
Modify a few references to underscore.
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This fixes these references when importing these modules through qunit.
2015-06-17 22:26:26 -04:00
guerler
cc979583ce
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into workflow_form_002
2015-06-17 16:04:37 -04:00
John Chilton
fe625bc6cf
Merge pull request #351 from guerler/add_argument_001
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Add parenthesis to argument name search
2015-06-16 15:03:35 -04:00
John Chilton
042ec77100
Merge pull request #347 from martenson/ts-refactor-static
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refactor TS javascript files to be separated from Galaxy JS
2015-06-16 14:23:33 -04:00
guerler
0c69c5b92f
Add parenthesis to argument name search
2015-06-15 14:58:20 -04:00
guerler
d2da9d9a17
Only add argument name if unavailable in help text
2015-06-15 13:46:01 -04:00
Martin Cech
e8087f7b12
refactor TS javascript files to be separated from Galaxy JS
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thanks to Carl for helping me with this
2015-06-15 13:31:16 -04:00
guerler
ca832ced32
Add tool parameter argument to parameter help
2015-06-15 13:25:39 -04:00
guerler
97212e9b32
Remove globals from workflow-node module
2015-06-15 12:27:29 -04:00
guerler
0b96cbd0e9
Remove unnecessary files
2015-06-15 12:22:38 -04:00
guerler
6bf4a45e25
Remove unnecessary export of OutputCalloutView
2015-06-15 04:27:56 -04:00
guerler
614b35e3a9
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into workflow_form_002
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Conflicts:
client/galaxy/scripts/galaxy.workflows.js
static/maps/galaxy.workflows.js.map
static/scripts/galaxy.workflows.js
2015-06-15 04:01:26 -04:00
guerler
fd9f027a5c
Further workflow front-end refactoring
2015-06-15 03:50:49 -04:00
Martin Cech
cfe9620192
backbone base of TS groups
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fix backbone hash problem; some more formatting and API polishing
refactor group API controller; better format group detail view
more formating and refactoring
add column to group detail
update details, add some more info to API response
2015-06-09 16:13:10 -04:00
guerler
4bceafcbf4
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into workflow_form_002
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Conflicts:
client/galaxy/scripts/galaxy.workflow_editor.canvas.js
static/maps/galaxy.workflow_editor.canvas.js.map
static/scripts/galaxy.workflow_editor.canvas.js
2015-06-08 14:43:04 -04:00
guerler
c18616d14a
Import js changes from https://github.com/galaxyproject/galaxy/pull/311/files
2015-06-08 14:37:41 -04:00
John Chilton
732abcc0db
Merge remote-tracking branch 'jmchilton/release_15.05' into dev
2015-06-08 14:04:28 -04:00
guerler
d22f1fb96d
Replace global js variables by shared object module
2015-06-06 17:06:59 -04:00
guerler
2815354989
Follow jquery blog suggestions on attr vs prop usage
2015-06-05 15:45:11 -04:00
guerler
38037e487d
Always open tool help links in a new window tab
2015-06-05 15:15:29 -04:00
guerler
62de13d075
Replace global by local functions and remove unused function
2015-06-04 12:32:58 -04:00
guerler
0bfd30a1a9
Move global add_node function to workflow class
2015-06-04 11:58:41 -04:00
guerler
a00461eaf6
Merge workflow_001
2015-06-04 02:42:53 -04:00
guerler
d01c108375
Reduce form mako to json generation, load form just once
2015-05-24 15:37:00 -04:00
guerler
44739c6457
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into workflow_form_000
2015-05-20 23:20:06 -04:00
Carl Eberhard
2257bdc665
UI, Tool form: remove select2 search.blur handler that re-focuses its search and prevents focusing on other elements
2015-05-20 18:10:26 -04:00
guerler
3217a20927
Update integer fields while editing
2015-05-20 01:52:19 -04:00
guerler
0742b43cc7
Change set at runtime icons
2015-05-20 01:09:20 -04:00
guerler
45b7a625ae
Explicitly identify runtime value in handling process
2015-05-19 23:21:32 -04:00
guerler
5691d345fa
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into workflow_form_000
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Conflicts:
lib/galaxy/tools/__init__.py
2015-05-19 18:44:29 -04:00
guerler
4fcd23c0f3
Extend checksum to account for collapsed input tool parameters
2015-05-19 18:41:51 -04:00
guerler
ab2238e533
Merge branch 'tool_form_000' into workflow_form_000
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Conflicts:
static/maps/mvc/form/form-data.js.map
static/scripts/mvc/form/form-data.js
2015-05-19 18:37:08 -04:00
guerler
2fa3dabf0e
Remove debug output
2015-05-19 17:39:27 -04:00
guerler
2db905c5c1
Add field id to checksum
2015-05-19 17:39:04 -04:00
guerler
bf436582a8
Fix checksum to detect tool form changes
2015-05-19 17:32:04 -04:00
Carl Eberhard
b5615d28a4
Merge remote-tracking branch 'origin' into bitbucket.dataset-choice
2015-05-19 11:57:36 -04:00
Carl Eberhard
6d20093f7b
UI, Dataset chooser: fix underscore templating and right,left border
2015-05-19 11:55:15 -04:00
guerler
da63f0bef9
Add RuntimeValue handling for new workflow editor form
2015-05-19 00:27:59 -04:00
guerler
32e027d431
Merge branch 'dev' of https://github.com/galaxyproject/galaxy into library_data_parameter
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Conflicts:
static/maps/mvc/form/form-section.js.map
static/scripts/mvc/form/form-section.js
2015-05-13 04:19:08 -04:00
Carl Eberhard
19d00d6ac6
Testing, qunit: remove unfortunately silent error of missing global Galaxy when running via require and phantom by checking scope first, update list of pairs tests with recent option changes, remove debugging cruft
2015-05-07 13:26:38 -04:00
Martin Cech
d28ea45556
Merge branch 'release_15.05' into dev
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Conflicts:
config/plugins/visualizations/common/templates/script_entry_point.mako
2015-05-07 13:09:24 -04:00
Carl Eberhard
c2d52fdddd
History UI: in published/annotated panels, fix metafile download dropdowns (BAM files, etc.) to open properly, remove console statement in template
2015-05-07 10:53:30 -04:00
Nate Coraor
3e80076e6a
Merge pull request #233 from guerler/workflow_1
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Fix post action job and annotation parsing in new workflow editor
2015-05-07 09:00:06 -04:00
guerler
08d76ee0cf
Fix automated section expansion for post job actions
2015-05-07 02:07:53 -04:00
John Chilton
21aea9cef7
Merge pull request #219 from carlfeberhard/testing
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Update qunit tests
2015-05-06 08:38:44 -05:00
Carl Eberhard
afd8344a8d
Testing, qunit: remove unfortunately silent error of missing global Galaxy when running via require and phantom by checking scope first, update list of pairs tests with recent option changes, remove debugging cruft
2015-05-05 17:04:13 -04:00
Carl Eberhard