Dannon Baker
79562cf8d2
Merge branch 'master' into dev
2015-07-01 14:29:13 -04:00
guerler
8b7a455b01
Disable custome tooltips for histograms
2015-06-30 13:46:12 -04:00
John Chilton
884e824d72
Merge remote-tracking branch 'vavrusa/table-datatype' into dev.
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Conflicts:
lib/galaxy/datatypes/tabular.py
2015-06-03 10:52:42 -04:00
guerler
cc1f56a118
Fix load order of require and d3
2015-05-27 11:18:04 -04:00
Nicola Soranzo
48023ed374
Remove outdated sentence.
2015-05-15 12:45:16 +01:00
Nate Coraor
a85eadfb74
Merge pull request #243 from carlfeberhard/vis.remove-template
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Visualizations registry: switch to entry_point config definition for …
2015-05-08 10:26:29 -04:00
Carl Eberhard
11b2fbcb3b
Visualizations registry: switch to entry_point config definition for built-in visualizations
2015-05-07 16:04:25 -04:00
Martin Cech
d28ea45556
Merge branch 'release_15.05' into dev
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Conflicts:
config/plugins/visualizations/common/templates/script_entry_point.mako
2015-05-07 13:09:24 -04:00
John Chilton
a15a2bd2b2
Fix Python 2.6 incompat in script_entry_point.mako.
2015-05-06 14:06:16 -04:00
Marek Vavrusa
bc8bdadca8
datatypes: extracted TabularData superclass from Tabular, CSV subclass
2015-04-30 17:20:32 +02:00
Carl Eberhard
ed36e625bb
Visualizations registry: refactor the relationship between plugins, the visualization controller, rendering, and rendering saved visualizations, minor fixes; Extend testing; Scatterplot: fix baseUrl resolution when used in own window
2015-04-28 15:41:01 -04:00
Carl Eberhard
d14aba2408
Visualizations registry: test script entry point; minor cleanup
2015-04-24 16:53:30 -04:00
Carl Eberhard
c4053f1427
Visualizations registry: add script_entry_point.mako and late_javascripts to visualization_base.mako
2015-04-24 13:07:55 -04:00
Carl Eberhard
2fe38db10b
Visualizations registry: *actually* correct the default title in visualization_base.mako
2015-04-24 12:57:27 -04:00
Carl Eberhard
385b4e71d6
Visualizations registry: split plugin classes: interactive environments, script entry, static file entry; correct default title in visualization_base.mako
2015-04-24 12:51:47 -04:00
yhoogstrate
b29ea767d9
Update scatterplot-display.js
2015-04-07 15:51:55 +02:00
yhoogstrate
fc51b85d2c
Update scatterplot-edit.js
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automatically generated by grunt
2015-04-07 15:50:30 +02:00
yhoogstrate
af8ddb14a3
ScatterPlot No API connection for nested www_root
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ScatterPlot makes use of a hardcoded API url which is incorrect for certain server configuratoins. Currently these servers need to be manually configured to link to the correct API URL. This patch creates the correct URL from the parental variable parent.galaxy_config.root and returns "/" if this variable can not be found. More visualisations suffer from this bug and have to be patched as well.
2015-04-07 14:59:29 +02:00
Carl Eberhard
4e5218f4dc
Charts: fix script tag order to prevent new version of Backbone loading as AMD; UI, Histories: remove debug statement
2015-03-16 10:48:52 -04:00
guerler
5bee11df4c
Charts: Add data point labels to all nvd3 charts (without this gene expression analysis using scatter plots is not very useful)
2015-02-28 12:12:10 -05:00
guerler
e6399874e8
Charts: Fix missing data message
2015-02-24 19:41:30 -05:00
guerler
e2f5e9e326
Charts: Rebuild and update charts
2015-02-24 19:08:36 -05:00
Carl Eberhard
8a79dfe99e
UI, multi-history: minor fixes, tabindeces, cleanup; Scatterplot: refactor mako and fix missing figure tag; Client build, styles: add jstree to cleaned files
2015-02-16 11:43:22 -05:00
Aysam Guerler
3ffcc2448c
Charts: Fix error message
2015-02-11 20:56:10 -05:00
Aysam Guerler
7eec63204d
Charts: Repack scripts
2015-02-11 20:26:46 -05:00
Carl Eberhard
2b8fca4a03
Visualizations, scatterplot: update handlebars since server runtime was updated
2015-02-09 11:02:31 -05:00
Aysam Guerler
68d9ea0fad
Ui: Fix class name
2015-02-06 11:23:19 -05:00
Aysam Guerler
836b3bb913
Ui: Revise portlet margins
2015-02-06 11:05:23 -05:00
Aysam Guerler
c8aece99eb
Workflow: Add style for workflow tool form
2015-02-05 22:25:22 -05:00
Carl Eberhard
ed8b7bd9ec
Plugins, Scatterplot: fix library imports to use proper path after ui.js breakup
2015-01-23 12:50:21 -05:00
Aysam Guerler
b709d7c061
Update to_html function for text tool, generalize text fields, remove trailing tabs
2015-01-21 11:20:02 -05:00
Aysam Guerler
0057365b06
Charts: Update scroll handler
2015-01-15 01:52:17 -05:00
Aysam Guerler
25100850c8
Charts: Prevent scrolling while zooming, add info text, fix styles
2015-01-15 01:40:39 -05:00
Aysam Guerler
c8f123fa2f
Charts: Avoid cursor replacement in label field
2015-01-14 11:08:14 -05:00
Aysam Guerler
adc2d60bed
ToolForm/Workflow: Add post job action forms, enable custom tool form sections
2015-01-13 01:09:03 -05:00
Aysam Guerler
0795557583
Ui: Minor style fix, Charts: Repack scripts
2014-12-10 10:51:37 -05:00
Carl Eberhard
612f3be1cc
Client build: modularize pagination plugin from ui.js
2014-12-08 15:04:47 -05:00
Carl Eberhard
3274d882bc
Client build: begin modularizing ui.js by extracting peekControl/peek-column-selector plugin, use UMD pattern, rename to peek-column-selector, extract less rules to their own file; Plugins, scatterplot: remove require and rework to use the new module
2014-12-08 14:47:48 -05:00
Aysam Guerler
bdff562a51
Charts: Use most recent select field style
2014-12-02 11:47:59 -05:00
Aysam Guerler
80c6aeaf93
Charts: Repack scripts
2014-11-13 16:40:59 -05:00
Aysam Guerler
a946ebf66f
Ui: Resize select fields
2014-11-13 16:38:49 -05:00
Aysam Guerler
e02ae27ab2
ToolForm: Prevent redundant ajax requests
2014-11-04 15:28:58 -05:00
Aysam Guerler
8ef50622cc
Charts: Fix storage call
2014-10-31 12:15:26 -04:00
Aysam Guerler
5d29c29cad
Charts: Update query limits
2014-10-29 13:37:33 -04:00
Aysam Guerler
916c7b4cc1
ToolForm: Fix citations
2014-10-29 11:37:04 -04:00
John Chilton
5547bb7df5
Refactor interactive environment plugin framework out of IPython and into Galaxy.
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Rely on more Python and less on mako, setup a small shared common mako file in config/plugins/interactive_environments/common/ie.mako. Move ie.js into client/galaxy/scripts/galaxy.interactive_environments.js and extract IPython's require config out so it doesn't have to directly reference client/galaxy/scripts/galaxy.interactive_environments.js (I doubt it is where that file actually should be).
2014-10-18 18:38:04 -04:00
John Chilton
06175f83f9
Update plugin framework to distinguish between viz and IE frameworks.
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Update IPython accordingly.
2014-10-18 18:38:04 -04:00
John Chilton
a52f4c21ee
Split interactive_environments out into their own plugin directory.
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Pragmatically this allows visualizations to be enabled by default but not IPython stuff and provides a spot to put a warning about security issues. More abstractly I think it provides a nice separation (initially though superficial) between these plugin types.
2014-10-18 18:38:04 -04:00
John Chilton
9969e10829
Update ie.mako to use galaxy_infrastructure_url if available...
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Also use the method guess_galaxy_port on Galaxy's config object that was moved there from ie.mako in a previous Galaxy commit.
2014-10-18 18:38:04 -04:00
John Chilton
eb5fb10726
Updated more correct discovery of Galaxy config file.
2014-10-18 18:38:04 -04:00
Dannon Baker