 Jeremy Goecks
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17f582002c
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Trackster: do not use child tracks for now because they do not work with new request_redraw structure.
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2011-09-19 00:07:24 -04:00 |
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Jeremy Goecks
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3de23a6592
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Trackster: improve method for fetching additional data and simply data fetching.
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2011-09-13 16:55:17 -04:00 |
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Jeremy Goecks
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fa2c21f104
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Fix trackster bug in determining tile bounds and in documentation.
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2011-09-12 14:51:26 -04:00 |
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Jeremy Goecks
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81ceb94f10
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Trackster: properly remove tracks from view's track array.
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2011-09-02 18:00:16 -04:00 |
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Jeremy Goecks
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f85b368f48
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Trackster: fix bug in computing tile_high and refactor tile bounds computation into own method.
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2011-09-02 14:08:53 -04:00 |
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Jeremy Goecks
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63191b8b83
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Trackster: enable track renaming through config dialog.
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2011-09-01 14:01:00 -04:00 |
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Jeremy Goecks
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7b529377fe
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Fix Trackster dragging/moving bugs.
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2011-09-01 12:13:45 -04:00 |
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Jeremy Goecks
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5017b7fe5d
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Trackster: add mode parameter to draw_tile and use to support better overview drawing.
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2011-08-31 11:44:52 -04:00 |
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Jeremy Goecks
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59ccdd10a3
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Trackster: add left_offset attribute to LineTrack so that line tracks can be set in overview.
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2011-08-28 14:07:33 -04:00 |
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Jeremy Goecks
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1dad07620c
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Trackster: introduce collections of tracks. Track 'groups' can be created and tracks can be added or removed from groups. Currently groups do not have a dropdown menu and cannot be saved.
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2011-08-26 17:45:50 -04:00 |
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Jeremy Goecks
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651eb1f2ee
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Trackster: treat numbers as floats when dynamically filtering. Pack scripts.
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2011-08-25 11:37:07 -04:00 |
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Jeremy Goecks
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a360a335c7
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Trackster: create a set of shared functions for managing the user interface and use functions in both visualization editor and display.
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2011-08-25 11:28:01 -04:00 |
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Jeremy Goecks
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e81c4ef6a8
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Pack scripts.
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2011-08-24 14:42:56 -04:00 |
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Jeremy Goecks
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9985d54d98
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Trackster: route track drawing through requestAnimationFrame framework.
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2011-08-24 10:19:38 -04:00 |
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Jeremy Goecks
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d073792e38
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Trackster: remove throttling during dynamic filtering because it's not needed with requestAnimationFrame.
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2011-08-23 17:27:58 -04:00 |
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Jeremy Goecks
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174e8d3c48
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Trackster: make it possible to set features' transparency based on attribute values.
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2011-08-23 17:21:37 -04:00 |
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James Taylor
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8f35ed245f
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Automated merge with https://bitbucket.org/galaxy/galaxy-central
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2011-08-11 18:37:14 -04:00 |
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James Taylor
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2c7b73b7c1
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remove delayed draw and replace with synchronized drawing through requestAnimationFrame (or a fallback)
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2011-08-11 18:36:51 -04:00 |
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Jeremy Goecks
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5b4d3b10ba
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Documentation and white space fixes for Trackster.
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2011-08-11 14:33:15 -04:00 |
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Jeremy Goecks
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04f79ed332
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Set Trackster overview height correctly.
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2011-08-10 16:50:04 -04:00 |
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Jeremy Goecks
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6982892410
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Trackster overview bug fix: always draw for display in visualization and then copy canvas for overview.
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2011-08-10 16:42:01 -04:00 |
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Jeremy Goecks
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c444a99840
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Trackster bug fixes: (a) provide additional vars for drawing histograms; and (b) ensure that FeatureTrack tiles cover track-tile background even when no data is present.
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2011-08-10 10:47:56 -04:00 |
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Jeremy Goecks
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dffac945d2
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Trackster: more fixes for overview functionality.
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2011-08-09 16:05:31 -04:00 |
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Jeremy Goecks
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38a16f5e85
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Trackster: only show a dynamic filter if min != max.
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2011-08-05 14:14:14 -04:00 |
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Jeremy Goecks
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9e220dcd66
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Trackster overview enhancements: (a) show and hide overview via track menus; (b) use tile cache to store overview tracks; (c) overview track saved and restored.
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2011-08-05 11:18:58 -04:00 |
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Jeremy Goecks
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4c4fceb0ac
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Trackster: get overview working again and pack script.
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2011-08-04 16:46:37 -04:00 |
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Jeremy Goecks
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942f702cf6
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Trackster: refactor post-draw actions into their own methods.
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2011-08-02 13:52:02 -04:00 |
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Jeremy Goecks
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f607243141
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Trackster documentation.
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2011-07-22 10:15:37 -04:00 |
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Jeremy Goecks
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d6673895d4
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Trackster: enable datasets without a set dbkey to be added to a visualization.
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2011-07-22 10:03:41 -04:00 |
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Jeremy Goecks
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ede957f36c
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Trackster: save data in Tile object and use to determine if filters are available.
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2011-07-21 14:22:33 -04:00 |
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Jeremy Goecks
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84d656d3d4
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Trackster: (a) fix bugs when indexing input datasets for rerunning tools; and (b) when user adds dataset to visualization via icon, show only visualizations with corresponding dbkey.
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2011-07-21 10:21:58 -04:00 |
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Kanwei Li
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84e2e155b3
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Tools: Add new LibraryDataset tool parameter to expose LDDAs to tools. Use trackster's modal popup interface for item selection. Add new InputWrapper that exposes LDDA templates as well.
Refactor tool_form.mako to use base_panels.mako instead of its own custom HTML.
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2011-07-18 21:56:23 -04:00 |
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Jeremy Goecks
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f9f69a5091
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Trackster: show 'Add Datasets' button when there are no tracks in a visualization. Refactor and modularize add tracks code so that is can be used in multiple places.
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2011-07-18 15:09:49 +02:00 |
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Jeremy Goecks
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aac6f22be9
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Trackster: document FeaturePainter object and methods as abstract.
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2011-07-14 12:12:55 +02:00 |
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Jeremy Goecks
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8a35f75e25
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Trackster: implement broad/wide incremental data fetching and add icons for data fetching.
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2011-07-07 11:55:14 -04:00 |
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Jeremy Goecks
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ea06c6bbfd
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Trackster: implement start_val parameter for data providers and use parameter to provide incremental fetching of data. Only 'deep' fetching is currently supported.
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2011-07-06 10:20:57 -04:00 |
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Jeremy Goecks
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9e26dfc35a
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Trackster: add infrastructure for getting data iteratively but, for now, still fetch all data when getting more data. Use Galaxy button styles as well.
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2011-07-05 11:42:56 -04:00 |
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Jeremy Goecks
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45815d4bc0
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Trackster refactoring: (a) change data_cache attributes to data_manager to reflect attribute type; (b) automatically use track mode and track view's chrom when getting data from the manager; and (c) calculate and store low, high for Tiles to facilitate reuse.
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2011-07-04 11:06:04 -04:00 |
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Jeremy Goecks
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7dae728413
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Trackster: provide option to fetch additional data when not all data initially fetched for a tile. For now, all data is refetched rather than iterative fetching. As part of this functionality: (a) enable data providers to accept a max_vals parameter that is used to fetch a particular number of values; and (b) Trackster caches now ignore items with stale=true.
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2011-07-03 15:05:25 -04:00 |
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Jeremy Goecks
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3c481e0817
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Fix FeatureTracks display bug introduced in 5640:b7c4c1bcf03d.
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2011-06-30 16:13:52 -04:00 |
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Jeremy Goecks
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52c5713940
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Add generic method for getting track type and use it when saving visualizations.
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2011-06-27 16:58:52 -04:00 |
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Jeremy Goecks
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5355a95ef3
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Trackster improvements: (1) add trackster_conf tag to tool definition; for now, tag indicates that tool is compatible with trackster, but will have configuration information in the future; (2) use trackster_conf tag to indicate that Cufflinks, gops intersect, and gops subtract are compatible with Trackster; and (3) remove .track_type attribute and use of it and use instanceof operator instead.
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2011-06-16 10:22:31 -04:00 |
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Jeremy Goecks
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945b6ec8de
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Improvements to trackster bookmarking: (a) provide link back to bookmarked region and (b) provide text area for editing annotation. Pack scripts.
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2011-06-14 10:29:42 -04:00 |
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Jeremy Goecks
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f1dd385293
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Add bookmarking to Trackster. Also group Trackster options into a single menu button.
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2011-06-10 13:38:24 -04:00 |
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Daniel Blankenberg
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f08e933a04
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Allow boolean inputs (checkbox) to be used as the parameter selector for conditional grouping inputs. Resolves #393.
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2011-06-08 13:05:03 -04:00 |
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Jeremy Goecks
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dd90b520b3
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Trackster: use error padding only when needed by placing error messages in div above tiles rather than in tiles.
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2011-06-06 11:17:31 -04:00 |
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Jeremy Goecks
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38479cf5c4
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Trackster bug fixes when (a) running tools in a shared visualization and (b) when drawing a track created by a tool.
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2011-05-19 14:29:58 -04:00 |
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Jeremy Goecks
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44beb62a25
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Trackster: have child track inherit mode from parent track.
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2011-05-19 13:47:52 -04:00 |
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Kanwei Li
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5caf51ddaa
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trackster: Refactor LineTrack overflow, fix it to work better for Line and Filled modes
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2011-05-16 17:08:06 -04:00 |
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Kanwei Li
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3275e4558c
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trackster: tweak resolution, fix LineTrack data bug
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2011-05-13 16:49:43 -04:00 |
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