 Jeremy Goecks
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e81c4ef6a8
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Pack scripts.
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2011-08-24 14:42:56 -04:00 |
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Jeremy Goecks
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9985d54d98
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Trackster: route track drawing through requestAnimationFrame framework.
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2011-08-24 10:19:38 -04:00 |
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Jeremy Goecks
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d073792e38
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Trackster: remove throttling during dynamic filtering because it's not needed with requestAnimationFrame.
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2011-08-23 17:27:58 -04:00 |
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Jeremy Goecks
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174e8d3c48
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Trackster: make it possible to set features' transparency based on attribute values.
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2011-08-23 17:21:37 -04:00 |
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James Taylor
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8f35ed245f
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Automated merge with https://bitbucket.org/galaxy/galaxy-central
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2011-08-11 18:37:14 -04:00 |
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James Taylor
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2c7b73b7c1
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remove delayed draw and replace with synchronized drawing through requestAnimationFrame (or a fallback)
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2011-08-11 18:36:51 -04:00 |
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Jeremy Goecks
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5b4d3b10ba
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Documentation and white space fixes for Trackster.
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2011-08-11 14:33:15 -04:00 |
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Jeremy Goecks
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04f79ed332
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Set Trackster overview height correctly.
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2011-08-10 16:50:04 -04:00 |
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Jeremy Goecks
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6982892410
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Trackster overview bug fix: always draw for display in visualization and then copy canvas for overview.
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2011-08-10 16:42:01 -04:00 |
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Jeremy Goecks
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c444a99840
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Trackster bug fixes: (a) provide additional vars for drawing histograms; and (b) ensure that FeatureTrack tiles cover track-tile background even when no data is present.
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2011-08-10 10:47:56 -04:00 |
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Jeremy Goecks
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dffac945d2
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Trackster: more fixes for overview functionality.
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2011-08-09 16:05:31 -04:00 |
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Jeremy Goecks
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38a16f5e85
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Trackster: only show a dynamic filter if min != max.
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2011-08-05 14:14:14 -04:00 |
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Jeremy Goecks
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9e220dcd66
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Trackster overview enhancements: (a) show and hide overview via track menus; (b) use tile cache to store overview tracks; (c) overview track saved and restored.
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2011-08-05 11:18:58 -04:00 |
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Jeremy Goecks
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4c4fceb0ac
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Trackster: get overview working again and pack script.
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2011-08-04 16:46:37 -04:00 |
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Nate Coraor
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7a41b0cb48
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User/group disk quotas.
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2011-08-04 10:39:16 -04:00 |
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Daniel Blankenberg
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22aa3a7082
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Update GMAJ: fixes a ClassCastException that was encountered on Macs running Java 1.6.
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2011-08-02 16:05:55 -04:00 |
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Jeremy Goecks
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942f702cf6
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Trackster: refactor post-draw actions into their own methods.
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2011-08-02 13:52:02 -04:00 |
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Kanwei Li
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a5f6735a28
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Cleaner fix for 5828:e34b1108f7f8
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2011-07-25 20:55:42 -04:00 |
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Jeremy Goecks
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f607243141
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Trackster documentation.
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2011-07-22 10:15:37 -04:00 |
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Jeremy Goecks
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d6673895d4
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Trackster: enable datasets without a set dbkey to be added to a visualization.
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2011-07-22 10:03:41 -04:00 |
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Jeremy Goecks
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ede957f36c
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Trackster: save data in Tile object and use to determine if filters are available.
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2011-07-21 14:22:33 -04:00 |
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Jeremy Goecks
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84d656d3d4
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Trackster: (a) fix bugs when indexing input datasets for rerunning tools; and (b) when user adds dataset to visualization via icon, show only visualizations with corresponding dbkey.
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2011-07-21 10:21:58 -04:00 |
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Kanwei Li
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6f2ce426d9
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Merged in semenko/galaxy-central-replace-bitbucket (pull request #2) for wiki links
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2011-07-19 22:18:40 -04:00 |
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Kanwei Li
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84e2e155b3
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Tools: Add new LibraryDataset tool parameter to expose LDDAs to tools. Use trackster's modal popup interface for item selection. Add new InputWrapper that exposes LDDA templates as well.
Refactor tool_form.mako to use base_panels.mako instead of its own custom HTML.
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2011-07-18 21:56:23 -04:00 |
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Nick Semenkovich
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403f2c73a3
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Update links to reflect Galaxy Wiki moving away from Bitbucket.
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2011-07-18 18:10:55 -05:00 |
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Jeremy Goecks
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f9f69a5091
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Trackster: show 'Add Datasets' button when there are no tracks in a visualization. Refactor and modularize add tracks code so that is can be used in multiple places.
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2011-07-18 15:09:49 +02:00 |
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Jeremy Goecks
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aac6f22be9
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Trackster: document FeaturePainter object and methods as abstract.
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2011-07-14 12:12:55 +02:00 |
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Jeremy Goecks
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8a35f75e25
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Trackster: implement broad/wide incremental data fetching and add icons for data fetching.
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2011-07-07 11:55:14 -04:00 |
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Jeremy Goecks
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ea06c6bbfd
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Trackster: implement start_val parameter for data providers and use parameter to provide incremental fetching of data. Only 'deep' fetching is currently supported.
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2011-07-06 10:20:57 -04:00 |
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Jeremy Goecks
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9e26dfc35a
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Trackster: add infrastructure for getting data iteratively but, for now, still fetch all data when getting more data. Use Galaxy button styles as well.
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2011-07-05 11:42:56 -04:00 |
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Jeremy Goecks
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45815d4bc0
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Trackster refactoring: (a) change data_cache attributes to data_manager to reflect attribute type; (b) automatically use track mode and track view's chrom when getting data from the manager; and (c) calculate and store low, high for Tiles to facilitate reuse.
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2011-07-04 11:06:04 -04:00 |
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Jeremy Goecks
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7dae728413
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Trackster: provide option to fetch additional data when not all data initially fetched for a tile. For now, all data is refetched rather than iterative fetching. As part of this functionality: (a) enable data providers to accept a max_vals parameter that is used to fetch a particular number of values; and (b) Trackster caches now ignore items with stale=true.
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2011-07-03 15:05:25 -04:00 |
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Jeremy Goecks
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3c481e0817
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Fix FeatureTracks display bug introduced in 5640:b7c4c1bcf03d.
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2011-06-30 16:13:52 -04:00 |
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Jeremy Goecks
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52c5713940
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Add generic method for getting track type and use it when saving visualizations.
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2011-06-27 16:58:52 -04:00 |
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Kanwei Li
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c1a3f9f93e
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Fix icons not lining up in embedded pages.
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2011-06-16 12:27:57 -04:00 |
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Jeremy Goecks
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5355a95ef3
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Trackster improvements: (1) add trackster_conf tag to tool definition; for now, tag indicates that tool is compatible with trackster, but will have configuration information in the future; (2) use trackster_conf tag to indicate that Cufflinks, gops intersect, and gops subtract are compatible with Trackster; and (3) remove .track_type attribute and use of it and use instanceof operator instead.
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2011-06-16 10:22:31 -04:00 |
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Nate Coraor
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61f392c235
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Disk space usage accounting: Users can see how much disk a history is consuming. Disk used is also a column on the history grid. Users can also forcibly purge a dataset from their history. Included is a script (scripts/set_dataset_sizes.py) which will set the value of the new total_size column on the dataset table (includes the contents of the extra_files_path and metadata files).
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2011-06-14 12:43:42 -04:00 |
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Jeremy Goecks
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945b6ec8de
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Improvements to trackster bookmarking: (a) provide link back to bookmarked region and (b) provide text area for editing annotation. Pack scripts.
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2011-06-14 10:29:42 -04:00 |
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Jeremy Goecks
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f1dd385293
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Add bookmarking to Trackster. Also group Trackster options into a single menu button.
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2011-06-10 13:38:24 -04:00 |
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Daniel Blankenberg
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f08e933a04
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Allow boolean inputs (checkbox) to be used as the parameter selector for conditional grouping inputs. Resolves #393.
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2011-06-08 13:05:03 -04:00 |
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Jeremy Goecks
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dd90b520b3
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Trackster: use error padding only when needed by placing error messages in div above tiles rather than in tiles.
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2011-06-06 11:17:31 -04:00 |
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Kanwei Li
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3167d89bcc
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Make branding not cover header links
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2011-05-26 09:50:07 +02:00 |
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Jeremy Goecks
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38479cf5c4
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Trackster bug fixes when (a) running tools in a shared visualization and (b) when drawing a track created by a tool.
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2011-05-19 14:29:58 -04:00 |
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Jeremy Goecks
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44beb62a25
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Trackster: have child track inherit mode from parent track.
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2011-05-19 13:47:52 -04:00 |
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Kanwei Li
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5caf51ddaa
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trackster: Refactor LineTrack overflow, fix it to work better for Line and Filled modes
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2011-05-16 17:08:06 -04:00 |
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Kanwei Li
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3275e4558c
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trackster: tweak resolution, fix LineTrack data bug
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2011-05-13 16:49:43 -04:00 |
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Jeremy Goecks
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649bd62af7
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Trackster: enable chaining of filters.
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2011-05-13 10:02:28 -04:00 |
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Jeremy Goecks
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4476d5eb00
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Trackster: reset filters when they are hidden.
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2011-05-12 20:01:42 -04:00 |
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Jeremy Goecks
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3eb0c50ae4
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Trackster: enable dynamic filters to be run on complete dataset using filter tools.
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2011-05-12 17:12:01 -04:00 |
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Kanwei Li
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efe0cba6d8
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trackster: Fix border and error not lining up at right place
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2011-05-11 15:43:33 -04:00 |
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