Details:
- Add a new workflow module describing subworkflows.
- Add workflow list to editor side panel - with options to link in a subworkflow module or copy the target workflow into the workflow being editted node for node.
- Update workflow, workflow step, and workflow invocation models to track subworkflow connections and execution.
- Extend workflow outputs with concepts of labels (and UUIDs while I'm there) to match workflow inputs. This allow us to have something to label outputs with in the workflow editor and to reference in the format 2 workflow description language.
- Extend workflow editor UI to allow labeling workflow outputs (and enforce that these are unique across a workflow).
- Extend workflow invocation and progress tracking to allow invoking a subworkflow as part of another workflow invocation.
- Extend workflow import and export code to allow a nested representation of workflows.
- Update format 2 workflow description to allow testing nested workflows.
Most relevant new and modified test cases can be run using the following commands:
```
./run_tests.sh -api test/api/test_workflows.py:WorkflowsApiTestCase.test_run_subworkflow_simple
./run_tests.sh -api test/api/test_workflows_from_yaml.py:WorkflowsFromYamlApiTestCase.test_subworkflow_simple
./run_tests.sh -api test/api/test_workflows_from_yaml.py:WorkflowsFromYamlApiTestCase.test_outputs
nosetests test/unit/test_galaxy_mapping.py
nosetests test/unit/workflows/test_workflow_progress.py
```
- If a step has a label, display it in the step editor side panel title.
- Allow clicking the title to change the label.
- Display the label (if set) as the workflow node box title.
- Add icon to workflow node since the title might not be related to type anymore.
- Enforce unique labels accross the workflow in the editor.
- Qunit test cases for some of this behavior and other recent changes.
Allow multiple collections to be fed to a multi data parameter in one reduction step. Fixes#750 and will really simplify certain classes of tools.
Rebased original with fixes for rerun of such reductions.
Manually tested workflow execution and everything seems fine. The workflow editor already thought this was possible, so that is another bug corrected by this enhancement.
To run the associated API test, execute the following command:
./run_tests.sh -with_framework_test_tools -api test/api/test_tools.py:ToolsTestCase.test_reduce_multiple_lists_on_multi_data
Conflicts:
static/maps/mvc/dataset/dataset-choice.js.map
static/maps/mvc/form/form-select-content.js.map
static/scripts/mvc/form/form-select-content.js
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