Dannon Baker
61a11341f9
When CONDA_ALREADY_INSTALLED is undefined there's an error due to the number of arguments in the boolean expression (we actually *do* always want a 1 or 0 there, never empty)
2016-07-08 10:52:08 -04:00
Remi Marenco
de702db55d
s/creation/activation. Thx @nsoranzo
2016-07-07 15:45:40 -04:00
remimarenco
b53a9275d5
Add Warning when Conda is installed because we skip the virtualenv creation
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Fix the case where we could have conda not installed but not setting VirtualEnv still (and have this non relevant warning
2016-07-07 14:34:40 -04:00
Dannon Baker
a946b04316
Merge pull request #2574 from bxlab/python3
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Python3: port 215 files
2016-07-05 09:57:54 -04:00
Nicola Soranzo
cd13423953
Python3: small fixes to previous commits
2016-06-26 02:43:57 -04:00
Junzhou Wang
f68a8198da
Python3: scripts/cleanup_datasets scripts/data_libraries
2016-06-25 21:49:25 -04:00
Junzhou Wang
e45f8abb54
Python3:script/api/
2016-06-25 20:49:06 -04:00
Junzhou Wang
a04f6589ea
Python3: test/shed_functional/ and test/unit/
2016-06-25 20:00:42 -04:00
Dannon Baker
a0b20a61a2
Initialize objectstore for fix_set_dataset_sizes script (otherwise it doesn't currently run successfully)
2016-06-25 19:04:44 -04:00
Nicola Soranzo
cc336f61c0
Make some files compatible with Python3
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Also enlarge the set of files tested with flake8 under Python3
2016-06-03 19:24:46 +01:00
John Chilton
ebd3250253
Merge pull request #2383 from natefoo/manylinux-support
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Drop "Galaxy pip" in favor of manylinux1 wheels (which are supported in pip >= 8.1)
2016-05-23 09:12:08 -04:00
Martin Cech
a743e530d0
Merge pull request #2388 from jmchilton/bootstrap_history_somemore
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Ever more informative, explicit, and complete release checklist.
2016-05-20 11:41:55 -04:00
John Chilton
308f74a25a
Ever more informative, explicit, and complete release checklist.
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- Update announcement acitivties to reflect release notes handled by devs in a diffrent, earlier step.
- Add example post links for various announcement activities.
- Add credential location information for Twitter.
- Add branch-time item to update bioblend target testing.
- Add item for scheduling a committer priority meeting (as done for this release by @martenson - thanks for taking charge on that!).
2016-05-20 10:50:24 -04:00
Nate Coraor
1be90e49b1
Remove unused $GXPIP_VERSION
2016-05-20 09:44:55 -04:00
Nate Coraor
39d78c7226
Drop "Galaxy pip" in favor of manylinux1 wheels (which are supported in
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pip >= 8.1).
2016-05-19 14:42:52 -04:00
Eric Rasche
d1e07e989d
Add devteam
2016-05-19 17:51:19 +00:00
Eric Rasche
49cb1d6a0a
Note on updating tool testing
2016-05-19 17:41:40 +00:00
Björn Grüning
6e6bfc796d
Update template to include the release of the Docker container
2016-05-19 16:51:14 +02:00
Martin Cech
702fe3c112
Merge pull request #2372 from jmchilton/release_process_revise_again
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More clarification of release process.
2016-05-18 10:43:00 -04:00
John Chilton
5a8d2a1ad8
More clarification of release process.
2016-05-18 08:03:08 -04:00
Nicola Soranzo
6ba6f798ec
Fix more E203 flake8 errors
2016-05-17 23:53:16 +01:00
Nicola Soranzo
8a43b2b492
Python 3: use "as" instead of comma in except clause
2016-05-17 23:53:16 +01:00
Nicola Soranzo
ed4132d9c0
Python3: Use open() instead of file()
2016-05-17 23:53:16 +01:00
Dannon Baker
6fc2ae42cd
Merge pull request #2295 from matthdsm/patch-4
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update check for Conda env.
2016-05-17 09:43:41 -04:00
matthdsm
ea2e9163d6
changed grep statement to match 2 patterns
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Now matches both "anaconda" and "continuum analytics"
2016-05-17 08:06:21 +02:00
Martin Cech
70c65f6bd2
remove prints
2016-05-16 15:58:21 -04:00
Martin Cech
661e008f1d
fix problems in bootstrap_history probably due to refactoring
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should work out of the box now, also minor rewording
2016-05-16 15:56:33 -04:00
Matt Chambers
384bdbfe70
Fix flaky "errors"
2016-05-13 11:38:48 -05:00
chambm
3a708a0089
Add filter_failed_datasets_from_collection.py script
2016-05-13 10:53:56 -05:00
matthdsm
90c48ff6e3
update check for Conda env.
2016-05-03 15:30:51 +02:00
Nicola Soranzo
408827e251
Merge branch 'release_16.04' into dev
2016-04-12 14:35:37 +01:00
Nicola Soranzo
a9d675f5e8
Fix sys.path.insert() after #2093 .
2016-04-11 20:27:25 +01:00
Nicola Soranzo
27f418c52d
Remove scripts which depend on install_and_test_tool_shed_repositories.
2016-04-11 20:27:25 +01:00
John Chilton
bf83b39e0d
Merge pull request #2113 from martenson/fix-blocking-issue-check
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fix blocking issue check
2016-04-08 20:30:55 -04:00
John Chilton
af42338ecc
Automate and clarify more of the release process.
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upstream is used repeatedly and just assumed to be a remote - this tests for it and adds it if it doesn't exist before using in make commands now. This also automates the previous release to dev merge in the instructions with a new Make command.
Additionally, two PRs need to be created to update versions. This prints a reminder to do this and adds it to the release checklist. Ideally, these PRs could be avoided with a direct push or automatically created with hub (https://github.com/github/hub ).
2016-04-08 14:17:55 -04:00
Martin Cech
2651587e82
fix blocking issue check;
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it would check the issues created by galaxybot before I think
2016-04-08 13:10:02 -04:00
John Chilton
2744d5541f
Merge pull request #2093 from davebx/move_scripts
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Move scripts out of lib/tool_shed.
2016-04-08 09:54:44 -04:00
Dave Bouvier
fbf8cfce2a
Remove unused import.
2016-04-05 14:23:56 -04:00
Dave Bouvier
9f1490cc60
Fix sys.path.insert some more.
2016-04-05 13:55:21 -04:00
Dave Bouvier
9bf3976e8a
Fix sys.path.insert
2016-04-05 13:50:51 -04:00
Dave Bouvier
77353902ee
Move scripts out of lib/tool_shed.
2016-04-05 13:04:44 -04:00
John Chilton
7aa2d6840a
Implement IntegrationTestCase and EmbeddedPulsarTestCase.
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IntegrationTestCases differ from functional tests in that they start up a Galaxy instance configured on a per test class basis - so this new class of "integration tests" can test configuration modalities of Galaxy that cannot be tested with traditional Galaxy functional tests.
2016-04-04 20:08:55 -04:00
John Chilton
b3881f86c1
For non-shed tool data - read loc from sample if available.
2016-04-01 17:25:47 -04:00
John Chilton
05a2f44126
Separate different style Galaxy testing behaviors into classes.
2016-03-29 08:04:28 -04:00
John Chilton
6faef4df2e
Introduce a TestDriver class to reduce duplication between test drivers.
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Classes allow de-duplicating logic and state organization in a different way than methods. Use a common setup, run, tear down paradigm for these tests.
2016-03-29 08:04:28 -04:00
John Chilton
eac6c10ec9
Allow running Galaxy tests on an existing external instance.
2016-03-29 08:04:27 -04:00
John Chilton
915b7edcb7
Unify and simplify script driver argument processing.
2016-03-29 08:04:27 -04:00
John Chilton
fc1861c4d9
Move "with framework test tools" logic out of nose driver and into run_tests.
2016-03-29 08:04:27 -04:00
John Chilton
8fdecbb3bf
Another simplifcation to method structure in scripts/functional_tests.py.
2016-03-29 08:04:27 -04:00
John Chilton
93cfdff910
Eliminate last custom config value setup in scripts/functional_tests.py...
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... outside of driver_util. So now we can just use the driver_util config object.
2016-03-29 08:04:27 -04:00
Dannon Baker