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109 Commits
Author SHA1 Message Date
mvdbeek 5cb1b8176c Update instructions for debugging using vscode 2021-01-29 17:15:42 +01:00
John Chilton 422d48bce1 Link to some recently filled out pydocs from sphinx testing docs. 2021-01-18 17:24:28 -05:00
John ChiltonandNicola Soranzo 400da5d677 Apply suggestions from code review 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2021-01-13 18:19:29 -05:00
John Chilton 21f06bafef API design guidelines. 2021-01-13 18:18:39 -05:00
Sergey GolitsynskiyandNicola Soranzo 64139e9bb3 Update doc/source/dev/writing_tests.md 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2021-01-12 10:04:27 -05:00
Sergey GolitsynskiyandNicola Soranzo f9b38719fd Update doc/source/dev/writing_tests.md 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2021-01-12 10:03:41 -05:00
Sergey GolitsynskiyandNicola Soranzo 0b0ec0cada Update doc/source/dev/writing_tests.md 
Co-authored-by: Nicola Soranzo <nicola.soranzo@gmail.com>
 2021-01-12 00:37:06 -05:00
Sergey Golitsynskiy 204538c387 Add more edits 2021-01-12 00:35:45 -05:00
Sergey Golitsynskiy dad51dee87 Make minor improvements, add ToC 2021-01-11 23:28:15 -05:00
Nicola Soranzo ed084a77c3 Add framework tests to Overview 
Also fix some typos.
 2021-01-11 19:07:39 +00:00
John Chilton 1a7215b040 Documentation on writing Galaxy tests. 2021-01-10 18:52:26 -05:00
John Chilton 1d63a3abd5 Link to high-quality developer documentation. 2021-01-10 18:52:26 -05:00
Nolan Woods 4ee6a1e6a0 Correct data table config documentation 2020-10-28 09:27:16 -07:00
Nolan Woods ccf2eadd38 Document data manager repository layout 2020-10-28 08:41:42 -07:00
Kaivan Kamali 3904b68a42 Move Galaxy configuration file for VS Code debugging into Galaxy repo 2020-10-21 12:14:55 -04:00
Kaivan Kamali 04ef92829f Update link for Galaxy configuration file in Galaxy debug document 2020-10-21 11:57:12 -04:00
Nicola Soranzo db904f2056 Don't allow datatype change by default if it's composite 
Also re-use the HDA deserializer in the dataset controller.
 2020-09-24 09:39:58 +01:00
Kaivan Kamali 9de2112448 Updated documentation to show how a job is de-qued and processed. 2020-09-03 11:33:20 -04:00
John Chilton 3cab834085 Merge pull request #9963 from kxk302/documentation 
Added doc explaining what happens when you upload a file to Galaxy.
 2020-08-13 16:59:43 -04:00
Matthias Bernt 92bbb82577 add missing $ in docs 2020-08-04 11:51:00 +02:00
Kaivan Kamali e80c6f25ac Fixed a typo 2020-07-06 13:52:24 -04:00
Kaivan Kamali 402fed9fed Added doc explaining what happens when you upload a file to Galaxy. 2020-07-06 11:32:21 -04:00
Kaivan Kamali 072be091e2 Removed trailing whitespace 2020-06-25 15:31:39 -04:00
Kaivan Kamali 2f6063c1f8 Revised documentation per code review feedback. 2020-06-25 15:04:16 -04:00
Kaivan Kamali b2ad77340a Revised doc based on PR feedback. 2020-06-25 15:02:23 -04:00
Kaivan Kamali ed30e7b051 More small revision 2020-06-25 15:02:23 -04:00
Kaivan Kamali ef38ff5390 Minor revision 2020-06-25 15:02:23 -04:00
Kaivan Kamali 88a76cd65a Added page documenting steps that happen during Galaxy startup. 2020-06-25 15:02:23 -04:00
Nuwan Goonasekera ce2e709379 Minor fixes to docs on how to build a job runner 2020-05-09 22:14:00 +05:30
kxk302andNicola Soranzo 5a9410bdc6 Apply suggestions from code review 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2020-04-27 16:08:48 -04:00
Kaivan Kamali b222fcfe1c Merge branch 'dev' of https://github.com/kxk302/galaxy into dev 2020-04-27 11:49:31 -04:00
Kaivan Kamali 3b88d38c27 Minor revision 2020-04-27 11:49:25 -04:00
kxk302andMarius van den Beek c97197a428 Update doc/source/dev/index.rst 
Co-Authored-By: Marius van den Beek <m.vandenbeek@gmail.com>
 2020-04-27 10:39:59 -04:00
Kaivan Kamali b631759081 Added link to the ini file. 2020-04-27 10:29:56 -04:00
Kaivan Kamali 77af56798f Added doc pages for debugging tests and Galaxy. 2020-04-24 16:27:43 -04:00
Dannon Baker 226ae08597 Merge remote-tracking branch 'upstream/release_20.01' into dev 2020-02-07 09:07:11 -05:00
Nicola Soranzo 77d8dac19a Various doc fixes 
- Merge invisible `doc/source/admin/reports.md` into
  `doc/source/admin/reports.rst`
- Misc fixes and cleanups
 2020-02-07 02:37:57 +00:00
Martin Cech 075212937f Merge pull request #9194 from hexylena/user-rename 
Update github username @erasche to @hexylena and correct inconsistencies
 2020-01-09 11:32:53 -05:00
Helena Rasche 1c27a3021e Rename @erasche to @hexylena and correct inconsistencies 2020-01-09 17:32:07 +01:00
Martin Cech c38f944255 knowing rst, this wouldn't work 2019-12-02 15:46:46 -05:00
Martin Cech 3f1419be63 apply @nsoranzo's review comments 
include style, imports, docs
 2019-12-02 15:42:33 -05:00
Peter Selten 341d04d749 Merge branch 'docs-data-types' of github.com:selten/galaxy into docs-data-types 2019-11-28 21:28:27 +01:00
Peter Selten f473ad9d70 Merge branch 'dev' of https://github.com/galaxyproject/galaxy into docs-data-types 2019-11-28 21:28:03 +01:00
Nicola Soranzo 79c6880c6b Remove unused Docker Swarm options 
Follow-up on https://github.com/galaxyproject/galaxy/pull/3863 .
 2019-09-22 22:52:05 +01:00
selten 7afd9b403e Add note that Tool Shed datatypes are deprecated 2019-08-28 21:34:35 +02:00
Peter Selten 73417c5af5 Add futher information and chane some naming and comments 2019-08-28 19:58:32 +02:00
seltenandNicola Soranzo 385752bf2c Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:26:57 +02:00
seltenandNicola Soranzo 69f72079a9 Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:26:18 +02:00
seltenandNicola Soranzo 323fcbe13d Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:25:59 +02:00
seltenandNicola Soranzo c76865081c Update doc/source/dev/data_types.md 
Co-Authored-By: Nicola Soranzo <nicola.soranzo@gmail.com>
 2019-08-28 19:25:44 +02:00