Aysam Guerler
3ece75b4fa
Parameters: Fix initial value for drill downs, Workflow/ToolForm: Move module building to api
2015-02-08 23:49:24 -05:00
Carl Eberhard
242f2634cf
API, configuration: expand exposed settings to include those needed by the masthead in galaxy.masthead.mako, add serializers for config
2015-02-06 13:38:53 -05:00
Aysam Guerler
a251de996a
ToolForm: Update version selection, use underscores for internal parameters
2015-02-05 13:34:51 -05:00
Daniel Blankenberg
0ed4ee779b
Allow reloading External Display applications without restarting Galaxy.
2015-02-04 16:12:03 -05:00
Aysam Guerler
889dc5a68f
ToolForm: Add optional tool state format
2015-02-03 23:40:36 -05:00
Carl Eberhard
bfb03c7be1
UI, history multi-view: fix column height response in firefox
2015-01-29 17:51:57 -05:00
Aysam Guerler
d38ca6c5eb
Workflow: Add tool form switch to config, fix late validation check
2015-01-29 00:38:02 -05:00
Aysam Guerler
a97c07c87f
ToolForm: Activate by default
2015-01-28 23:59:43 -05:00
Nate Coraor
23f3e479be
Remove memdump, which probably has not worked for many years.
2015-01-28 16:20:30 -05:00
Dave Bouvier
126c98031f
Remove the alert popups from the repository and tool dependency installation status pages.
2015-01-28 11:49:48 -05:00
Aysam Guerler
b05ffd2d52
ToolForm: Fix configuration flag
2015-01-27 18:31:20 -05:00
Daniel Blankenberg
4243282427
Fix for re-displaying user registration form when registering as an email of an admin_user that is already declared in galaxy.ini (cntrller r dmb). NB: Automatic refresh of masthead after success did not seem to be occuring.
2015-01-27 14:52:55 -05:00
Dannon Baker
551dfc453e
Allow cancelling of upload jobs. This won't cancel the actual upload, but it'll kill (or prevent) the processing job if it exists. This also allows one to clean up 'zombie' upload jobs that never leave 'upload' state via the admin panel.
2015-01-26 16:25:19 -05:00
Aysam Guerler
178666baeb
ToolForm: Fix optional dataset parameters, fix inconsistencies in parameter handling
2015-01-23 12:04:50 -05:00
Carl Eberhard
0ff2c2139d
Fix bootstrapped user data to use proper escaping (crap...) and allow history/hda tag to autocomplete again
2015-01-22 18:55:37 -05:00
Carl Eberhard
a9a562d784
(Manually) merge central
2015-01-21 12:45:37 -05:00
Aysam Guerler
b507bd2a16
Generalize tool form options required for workflow editor
2015-01-21 12:02:19 -05:00
Aysam Guerler
9ba84f4cc3
Generalize is_dynamic property, fix error validation for workflow tool form
2015-01-20 22:02:21 -05:00
Carl Eberhard
ac6f5b8378
Merged galaxy/galaxy-central into default
2015-01-14 17:18:35 -05:00
Dannon Baker
de15ce61ad
Admins should have to re-authenticate to change password via this mechanism as well.
2015-01-14 09:44:33 -05:00
Carl Eberhard
e3f57827f1
Merged galaxy/galaxy-central into default
2015-01-14 08:59:34 -05:00
Dannon Baker
d83866c0c8
Make password reset via link feature work for the toolshed too.
2015-01-13 16:27:35 -05:00
Carl Eberhard
cf9641ec64
Merged galaxy/galaxy-central into default
2015-01-13 16:17:43 -05:00
Dannon Baker
88e594d732
Change password does not need 'cntrller'.
2015-01-13 15:08:55 -05:00
Dannon Baker
a3efbc6fa3
Style tweaks in user_info.mako
2015-01-13 14:24:15 -05:00
Dannon Baker
dc06d32ec9
Initial password reset token feature.
2015-01-13 14:17:33 -05:00
Carl Eberhard
735719b263
Merged galaxy/galaxy-central into default
2015-01-13 08:44:42 -05:00
Aysam Guerler
adc2d60bed
ToolForm/Workflow: Add post job action forms, enable custom tool form sections
2015-01-13 01:09:03 -05:00
Carl Eberhard
dde6a73ed6
Merged galaxy/galaxy-central into default
2015-01-12 16:11:32 -05:00
Carl Eberhard
d26c79c88c
Fix to UI modularization & trackster: add mod_icon_btn to the proper closure; Fix to TagManager refactoring: remove trans from tagging_common.mako method calls
2015-01-12 16:06:43 -05:00
Carl Eberhard
f1dfc4c58a
Merged galaxy/galaxy-central into default
2015-01-12 10:18:56 -05:00
Dannon Baker
520f0f227e
Merge.
2015-01-12 08:59:51 -05:00
Aysam Guerler
0681eeeabc
Upload: Show upload button only in analysis view
2015-01-11 12:59:43 -05:00
Aysam Guerler
ebfc74011d
ToolForm/Workflow: Generalize/revise tool model building process, insert form into workflow editor
2015-01-11 12:02:11 -05:00
Carl Eberhard
fac23b2a1a
History Mgr: eliminate the UsesHistoryMixin; HDA Mgr: move serveral methods into mgr from UsesHDAMixin; User Mgr: improve api generation/checking
2015-01-09 13:22:06 -05:00
Dannon Baker
77638ab961
Strip whitespace.
2015-01-07 14:51:24 -05:00
Dannon Baker
9ab24f95fd
Slightly bump the width of the Message field for bug reports.
2015-01-07 14:51:11 -05:00
John Chilton
aa86181e7c
Move ToolSection and ToolSectionLabel out of galaxy.tools directly.
...
Would like to move the whole ToolBox out of galaxy.tools and into galaxy.tools.toolbox but need to separate all dependencies on galaxy.tools first.
2014-12-31 18:21:10 -05:00
John Chilton
8edced2685
Bugfix: Apply tool panel filtering in workflow editor.
...
Bug originally reported by Eric here - http://dev.list.galaxyproject.org/Bug-Toolbox-filters-not-applied-in-workflows-td4662879.html (though this only fixes the superficial bug of them showing up in the workflow editor - and does not yet implement "strong" toolbox filters as requested).
This is actually a broader change that centralizes logic for listing out tool panel contents when displaying components to the user and the added filtering comes about from that. It also eliminates the last places Galaxy was accessing toolbox.tool_panel directly (in those mako templates).
2014-12-29 11:48:38 -05:00
Daniel Blankenberg
190409af3a
Do not |h escape tool dependency error message, as it is escaped and formated by tool_shed.util.basic_util.to_html_string
2014-12-15 17:01:07 -05:00
Dave Bouvier
a0ccbc5bfa
Merge next-stable changes to default.
2014-12-11 14:20:21 -05:00
Dave Bouvier
c9c4926961
Merge stable changes to next-stable.
2014-12-11 14:19:44 -05:00
Martin Cech
245418f342
Merged in martenson/galaxy-central-marten/stable (pull request #599 )
...
[STABLE] encode dataset, ldda, folder and library IDs properly in some more places
2014-12-11 13:01:22 -05:00
Dannon Baker
b0827d8b20
Merged in davebgx/galaxy-central/stable (pull request #603 )
...
[STABLE] Escape anything that could be user input in my assigned mako templates, add markupsafe.escape to username and email in users API controller.
2014-12-11 09:50:35 -05:00
John Chilton
c8e7f46c38
Merged in dannon/galaxy-central/stable (pull request #602 )
...
[STABLE] Force sanitization of form.title and form.name. Header needs more digging; we actually use html content in the field.
2014-12-10 12:20:55 -05:00
Dave Bouvier
69ff4677bc
Escape anything that could be user input in mako templates, add markupsafe.escape to username and email in users API controller.
2014-12-10 11:31:21 -05:00
Aysam Guerler
0edd57433c
ToolForm: Activate tool form
2014-12-10 11:02:50 -05:00
Dannon Baker
277c47f54f
Additionally sanitize form input fields (label, name, etc.)
2014-12-09 15:44:08 -05:00
Dannon Baker
59ef82eec0
Force sanitization of form.title and form.name. Header needs more digging; we actually use html content in the field.
2014-12-09 14:46:03 -05:00
Carl Eberhard
90b0fb587a
Client build: remove references to ui.js in client and templates; mv scripts/jq-plugins/ui to more generic/catch-all scripts/ui/
2014-12-09 13:52:24 -05:00
Aysam Guerler