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Attempt binary conversion of newlines if UTF conversion fails.

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This commit is contained in:
John Chilton
2019-05-15 15:57:44 -04:00
parent 8ae1dd1e4d
commit fc5d068044
4 changed files with 815 additions and 17 deletions
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test/unit/datatypes/test_sniff.py
+13 -1
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@@ -1,6 +1,11 @@
import tempfile
from galaxy.datatypes.sniff import convert_newlines_sep2tabs, sep2tabs
from galaxy.datatypes.sniff import (
convert_newlines,
convert_newlines_sep2tabs,
get_test_fname,
sep2tabs,
)
def assert_converts_to_1234_sep2tabs(content, line_ending="\n"):
@@ -23,6 +28,13 @@ def assert_converts_to_1234_convert_sep2tabs(content, expected='1\t2\n3\t4\n', l
assert expected == open(tf.name).read()
def test_convert_newlines_non_utf():
fname = get_test_fname("dosimzml")
rval = convert_newlines(fname, tmp_prefix="gxtest", tmp_dir=tempfile.gettempdir(), in_place=False)
new_file = rval[1]
assert open(new_file, "rb").read() == open(get_test_fname("1.imzml"), "rb").read()
def test_sep2tabs():
assert_converts_to_1234_sep2tabs("1 2\n3 4\n")
assert_converts_to_1234_sep2tabs("1 2\n3 4\n")